diff monorail.xml @ 16:d2770bc432e1 draft

Uploaded

--- a/monorail.xml	Wed Feb 13 17:03:56 2019 -0500
+++ b/monorail.xml	Wed Feb 13 18:39:50 2019 -0500
@@ -2,10 +2,18 @@
     <!-- much of this was based on https://github.com/galaxyproject/tools-iuc/blob/master/tools/rgrnastar/rg_rnaStar.xml -->
     <requirements>
         <requirement type="package" version="1.9">samtools</requirement>
-        <requirement type="package" version="2.6.0b">star</requirement>
+        <requirement type="package" version="2.6.1b">star</requirement>
         <requirement type="package" version="0.2.6">bamcount</requirement>
-        <requirement type="package" version="5.4.0">snakemake</requirement>
-        <requirement type="package" version="1.3.8">zstd</requirement>
+        <requirement type="package" version="5.4.0">snakemake-minimal</requirement>
+        <requirement type="package" version="1.3.3">zstd</requirement>
+        <requirement type="package" version="1.3">seqtk</requirement>
+<!--
+        <requirement type="package" version="2.1.0">hisat2</requirement>
+        <requirement type="package" version="0.8">fastq-tools</requirement>
+        <requirement type="package" version="0.12.0">salmon</requirement>
+        <requirement type="package" version="0.5.0">regtools</requirement>
+        <requirement type="package" version="2.9.1">sra-tools</requirement> 
+-->
     </requirements>
         <!-- /bin/bash -x monorail.slim.sh ../ath10 4 10 ../ath10/gtf/exons.bed ./tmp2 ../fastqs/SRR8505407_1_100.fastq.gz ../fastqs/SRR8505407_2_100.fastq.gz -->
         <command detect_errors="aggressive"><![CDATA[