Mercurial > repos > chrisw > monorail_test

diff Snakefile @ 37:5656cfea6d97 draft

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author chrisw
date Wed, 20 Nov 2019 02:42:57 +0000
parents e4dc3d0c31de
children
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--- a/Snakefile	Wed Nov 20 00:47:20 2019 +0000
+++ b/Snakefile	Wed Nov 20 02:42:57 2019 +0000
@@ -47,7 +47,7 @@
 
 import re
 #limit the outputs/steps to only 1) STAR called junctions 2) all reads per-base coverage (BigWigs) 3) all reads exon summarized coverage 4) AUC (for QC)
-STEPS_FILES_FILTER=re.compile(r'(unmapped)|(download)|(salmon)|(extract_jx)|(jx_bed)|(manifest)|(nonref)|(Chimeric)(fastq_check)|(frag)|(unique)')
+STEPS_FILES_FILTER=re.compile(r'(unmapped)|(download)|(salmon)|(extract_jx)|(jx_bed)|(manifest)|(nonref)|(Chimeric)|(fastq_check)|(frag)|(unique)')
 def remove_steps_files():
     #modify STEP and FILES
     #so we don't run download or unmapped steps