Mercurial > repos > chrisw > monorail_test

comparison Snakefile @ 13:af1f49e5242d draft

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Uploaded
author chrisw
date Wed, 13 Feb 2019 15:53:50 -0500
parents 849ab444b4f1
children f2258de365ee
comparison
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12:849ab444b4f1 13:af1f49e5242d
14 'all.exon_bw_count.zst', 'unique.exon_bw_count.zst', 14 'all.exon_bw_count.zst', 'unique.exon_bw_count.zst',
15 'manifest'] 15 'manifest']
16 16
17 import os 17 import os
18 config['output']=os.path.abspath(config['output']) 18 config['output']=os.path.abspath(config['output'])
19 config['temp']=os.path.abspath(config['temp'])
19 20
20 import subprocess 21 import subprocess
21 def run_command(cmd_args): 22 def run_command(cmd_args):
22 cmd_args = ' '.join(cmd_args) 23 cmd_args = ' '.join(cmd_args)
23 try: 24 try: