# HG changeset patch
# User chrisw
# Date 1573712574 0
# Node ID ef7b73b359859cf740cc6c79ac5c17e6cd453af8
# Parent  f7a05c747a440f548fdcc3b6387523820e7d8931
Uploaded

diff -r f7a05c747a44 -r ef7b73b35985 data_manager_monorail_index/data_manager/data_manager.py
--- a/data_manager_monorail_index/data_manager/data_manager.py	Thu Nov 14 04:54:19 2019 +0000
+++ b/data_manager_monorail_index/data_manager/data_manager.py	Thu Nov 14 06:22:54 2019 +0000
@@ -28,7 +28,7 @@
     version = url_comps[-2]
     data_manager_entry['dbkey'] = ref.lower()
     data_manager_entry['value'] = ref.lower()
-    data_manager_entry['name'] = ref.upper()
+    data_manager_entry['name'] = ref.lower()
     jsonin = open(args.config).read()
     params = json.loads(jsonin)
     #target_directory = params['output_data'][0]['extra_files_path']
diff -r f7a05c747a44 -r ef7b73b35985 data_manager_monorail_index/tool-data/monorail_index.loc.sample
--- a/data_manager_monorail_index/tool-data/monorail_index.loc.sample	Thu Nov 14 04:54:19 2019 +0000
+++ b/data_manager_monorail_index/tool-data/monorail_index.loc.sample	Thu Nov 14 06:22:54 2019 +0000
@@ -21,5 +21,3 @@
 #create indices without annotations and then specify an annotation file and
 #maximum read length (minus 1) when running STAR.
 #
-#hg19   hg19    hg19 full   /mnt/galaxyIndices/genomes/hg19/rnastar	0	2.7.1a
-#hg19Ensembl   hg19Ensembl    hg19 full with Ensembl annotation   /mnt/galaxyIndices/genomes/hg19Ensembl/rnastar	1	2.7.1a
diff -r f7a05c747a44 -r ef7b73b35985 data_manager_monorail_index/tool_data_table_conf.xml.sample
--- a/data_manager_monorail_index/tool_data_table_conf.xml.sample	Thu Nov 14 04:54:19 2019 +0000
+++ b/data_manager_monorail_index/tool_data_table_conf.xml.sample	Thu Nov 14 06:22:54 2019 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tables>
-    <table name="monorail_index" comment_char="#">
-        <columns>value, dbkey, name, path</columns>
+    <table allow_duplicate_entries="False" name="monorail_index" comment_char="#">
+        <columns>value, dbkey, name, path, exons_path, version</columns>
         <file path="tool-data/monorail_index.loc" />
     </table>
 </tables>