# HG changeset patch
# User chrisw
# Date 1573684863 0
# Node ID e29807729c442e8ad22d07af614dca502000c131
# Parent  32f5ba11ad9940a7180773c508424480587d573d
Uploaded

diff -r 32f5ba11ad99 -r e29807729c44 data_manager_monorail_index/tool-data/monorail_index.loc.sample
--- a/data_manager_monorail_index/tool-data/monorail_index.loc.sample	Wed Nov 13 22:29:29 2019 +0000
+++ b/data_manager_monorail_index/tool-data/monorail_index.loc.sample	Wed Nov 13 22:41:03 2019 +0000
@@ -1,26 +0,0 @@
-#This is a sample file distributed with Galaxy that enables tools
-#to use a directory of rna-star indexed sequences data files. You will
-#need to create these data files and then create a rnastar_index2.loc
-#file similar to this one (store it in this directory) that points to
-#the directories in which those files are stored. The rnastar_index2.loc
-#file has this format (longer white space characters are TAB characters):
-#
-#<unique_build_id>   <dbkey>   <display_name>   <file_base_path>	<with_gene_model>	<version>
-#
-#The <with_gene_model> column should be 1 or 0, indicating whether the index
-#was built with annotations (i.e., --sjdbGTFfile and --sjdbOverhang were used)
-#or not.
-#
-#The <version> column indicates the STAR version that introduced the format of
-#the index, i.e., the oldest STAR version that could make use of the index.
-#
-#Note that STAR indices can become quite large. Consequently, it is only
-#advisable to create indices with annotations if it's known ahead of time that
-#(A) the annotations won't be frequently updated and (B) the read lengths used
-#will also rarely vary. If either of these is not the case, it's advisable to
-#create indices without annotations and then specify an annotation file and
-#maximum read length (minus 1) when running STAR.
-#
-#hg19   hg19    hg19 full   /mnt/galaxyIndices/genomes/hg19/rnastar	0	2.7.1a
-#hg19Ensembl   hg19Ensembl    hg19 full with Ensembl annotation   /mnt/galaxyIndices/genomes/hg19Ensembl/rnastar	1	2.7.1a
-
diff -r 32f5ba11ad99 -r e29807729c44 data_manager_monorail_index/tool_data_table_conf.xml.sample
--- a/data_manager_monorail_index/tool_data_table_conf.xml.sample	Wed Nov 13 22:29:29 2019 +0000
+++ b/data_manager_monorail_index/tool_data_table_conf.xml.sample	Wed Nov 13 22:41:03 2019 +0000
@@ -1,6 +1,5 @@
 <?xml version="1.0"?>
 <tables>
-    <!-- Locations of gene annotation data -->
     <table name="monorail_index" comment_char="#">
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/monorail_index.loc" />