# HG changeset patch
# User chrisw
# Date 1573678948 0
# Node ID 7d7328ce424b1ced13dd3b96be52c35417716dcb
# Parent  79f33bace3da99e38e562d58b969e2c3713aa081
Uploaded

diff -r 79f33bace3da -r 7d7328ce424b data_manager_monorail_index/data_manager/data_manager.py
--- a/data_manager_monorail_index/data_manager/data_manager.py	Wed Nov 13 20:56:31 2019 +0000
+++ b/data_manager_monorail_index/data_manager/data_manager.py	Wed Nov 13 21:02:28 2019 +0000
@@ -27,6 +27,7 @@
     target_directory = params['output_data'][0]['extra_files_path']
     #data_manager_entry['path'] = params['output_data'][0]['extra_files_path']
     data_manager_entry['path'] = target_directory
+    data_manager_entry['name'] = ref
     #data_manager_entry['exons_path'] = data_manager_entry['path'] + os.sep + 'gtf' + os.sep + 'exons.bed'
     data_manager_json = dict(data_tables={'monorail_index': [data_manager_entry]})
     file(args.output, 'wb').write(json.dumps(data_manager_json))
diff -r 79f33bace3da -r 7d7328ce424b data_manager_monorail_index/data_manager_conf.xml
--- a/data_manager_monorail_index/data_manager_conf.xml	Wed Nov 13 20:56:31 2019 +0000
+++ b/data_manager_monorail_index/data_manager_conf.xml	Wed Nov 13 21:02:28 2019 +0000
@@ -8,9 +8,9 @@
                 <column name="path" output_ref="out_file">
                     <move relative_symlinks="True" type="directory">
                         <!-- no need to set source, gets taken from out_dir.extra_files_path -->
-                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/</target>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/mri/${value}</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/{$dbkey}/${path}</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/{$dbkey}/mri/${value}/${path}</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>