Mercurial > repos > christian-h > io_test

diff ToolShedTest/IO_test.xml @ 0:be1a1416cf28 draft

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author christian-h
date Thu, 09 Jan 2014 07:54:55 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ToolShedTest/IO_test.xml	Thu Jan 09 07:54:55 2014 -0500
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+<tool id="IOTest" name="IO-Test" version="0.0.1">
+  <description>for Galaxy-R IO-Testing</description>
+  <command interpreter="bash">
+	discard_stderr_wrapper.sh R --slave --vanilla -f IO_test.R --args key=$input01 test="" user="$__user_email__" toolPath=$__tool_data_path__ mylocals="${ locals() }" mydir="${ dir() }" myself="${ dir(self) }" mygroup=${ str($__app__.model.UserGroupAssociation.group) } url1=$__app__.config.fluent_host url2=$__app__.config.fluent_port rootPath=$__root_dir__ output01
+  </command>
+  <inputs>
+  	<param name="input01" type="data" format="txt" label="Text File" />
+  </inputs>
+  <outputs>
+       <data name="output01" type="data" format="txt" label="IOreport" />
+  </outputs> 
+
+
+  <help>
+[!!testing!!]
+This is just for testing the python/galaxy - R IO-Interface!
+
+The output is plain text.
+[!!testing!!]
+  </help>
+</tool>