diff snp_caller/src/FastaRecord.cpp @ 0:0fd352f62446 draft default tip

planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snp_caller/src/FastaRecord.cpp	Sun Feb 21 06:05:24 2016 -0500
@@ -0,0 +1,27 @@
+#include <algorithm>
+
+#include "FastaRecord.h"
+
+FastaRecord::FastaRecord(std::string gene_id, std::string gene) :
+	_gene_id(gene_id), _gene(gene) {}
+
+int FastaRecord::find_gene(const std::vector<FastaRecord> & records,
+			   const std::string &gene_id,
+			   const std::string seq) {
+	int gene_index;
+	
+	std::vector<FastaRecord>::const_iterator low;
+	low = std::lower_bound(records.begin(), records.end(),
+			       FastaRecord(gene_id, seq),
+			       [](const FastaRecord &a, const FastaRecord &b)
+			       { return a.gene_id() < b.gene_id(); });
+	gene_index = (low - records.begin());
+
+	return gene_index;
+}
+
+void FastaRecord::sort_by_gene_id(std::vector<FastaRecord> &records) {
+	sort(records.begin(), records.end(),
+             [](const FastaRecord &a, const FastaRecord &b)
+	     { return a.gene_id() < b.gene_id(); });
+}