view resistome_analyzer.xml @ 11:998a78df9bee draft

planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 9f4b17c83e6be0903b4b5da35863bfc3bb9c48b4

<tool id="resistome_analyzer" name="ResistomeAnalyzer" version="0.1.0">
    <description>A simple tool for analyzing the resistome of metagenomic sequence data</description>
    <requirements>
	<requirement type="package" version="0.1">resistomeanalyzer</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command><![CDATA[
	resistome
	  -ref_fp $reference
	  -annot_fp $annotation
	  -sam_fp $sam
	  -prefix $prefix
    ]]></command>
    <inputs>
	<param type="data" name="reference" format="fasta" label="Reference sequence" />
	<param type="data" name="sam" format="sam" label="SAM file" />
	<param type="data" name="annotation" format="csv" label="Annotation file" />
    </inputs>
    <outputs>
	<data format="txt" name="report">
                <discover_datasets pattern="(?P&lt;designation&gt;.+)\.tsv" ext="tabular" directory="tables" visible="true" />
        </data>
    </outputs>
    <citations>
    </citations>
</tool>