Mercurial > repos > chrisd > resistome_analyzer

annotate resistome_analyzer.xml @ 6:d67a1250153c draft

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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 543ca2b38564409ae5e1d1baec77a2c924634eef
author chrisd
date Sun, 09 Oct 2016 04:47:23 -0400
parents 12dcd63b996f
children a6d2940e8af8
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c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
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1 <tool id="resistome_analyzer" name="ResistomeAnalyzer" version="0.1.0">
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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2 <description>A simple tool for analyzing the resistome of metagenomic sequence data</description>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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3 <requirements>
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d67a1250153c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 543ca2b38564409ae5e1d1baec77a2c924634eef
chrisd
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4 <requirement type="package" version="0.1">resistomeanalyzer</requirement>
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c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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5 </requirements>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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6 <stdio>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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7 <exit_code range="1:" />
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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8 </stdio>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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9 <command><![CDATA[
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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10 resistome
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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11 -ref_fp $reference
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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12 -annot_fp $annotation
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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13 -sam_fp $sam
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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14 -prefix $prefix
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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15 ]]></command>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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16 <inputs>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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17 <param type="data" name="reference" format="fasta" label="Reference sequence" />
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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18 <param type="data" name="sam" format="sam" label="SAM file" />
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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19 <param type="data" name="annotation" format="csv" label="Annotation file" />
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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20 </inputs>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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21 <outputs>
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431eaab8b903 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit a053108c583eb0f24b47e88ec235747696f20ef0
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22 <data name="prefix" format="tabular" />
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c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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23 </outputs>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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24 <citations>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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25 </citations>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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26 </tool>