Mercurial > repos > chrisd > resistome_analyzer

annotate resistome_analyzer.xml @ 17:a54c93a53507 draft default tip

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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 20f9d075eda4871b5ece73daa8705d4a6a27bb34
author chrisd
date Sun, 09 Oct 2016 06:15:43 -0400
parents 5d0768399bd1
children
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c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
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1 <tool id="resistome_analyzer" name="ResistomeAnalyzer" version="0.1.0">
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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2 <description>A simple tool for analyzing the resistome of metagenomic sequence data</description>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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3 <requirements>
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d67a1250153c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 543ca2b38564409ae5e1d1baec77a2c924634eef
chrisd
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4 <requirement type="package" version="0.1">resistomeanalyzer</requirement>
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c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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5 </requirements>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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6 <stdio>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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7 <exit_code range="1:" />
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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8 </stdio>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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9 <command><![CDATA[
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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10 resistome
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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11 -ref_fp $reference
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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12 -annot_fp $annotation
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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13 -sam_fp $sam
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5d0768399bd1 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 619031b21597c5b7e7753ae37edda7ccd0f85829
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14 -gene_fp $gene
5d0768399bd1 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 619031b21597c5b7e7753ae37edda7ccd0f85829
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15 -mech_fp $mech
5d0768399bd1 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 619031b21597c5b7e7753ae37edda7ccd0f85829
chrisd
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16 -class_fp $class
5d0768399bd1 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 619031b21597c5b7e7753ae37edda7ccd0f85829
chrisd
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17 -group_fp $group
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c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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18 ]]></command>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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19 <inputs>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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20 <param type="data" name="reference" format="fasta" label="Reference sequence" />
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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21 <param type="data" name="sam" format="sam" label="SAM file" />
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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22 <param type="data" name="annotation" format="csv" label="Annotation file" />
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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23 </inputs>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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24 <outputs>
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a54c93a53507 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 20f9d075eda4871b5ece73daa8705d4a6a27bb34
chrisd
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25 <data name="gene" format="tabular" />
a54c93a53507 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 20f9d075eda4871b5ece73daa8705d4a6a27bb34
chrisd
parents: 16
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26 <data name="mech" format="tabular" />
a54c93a53507 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 20f9d075eda4871b5ece73daa8705d4a6a27bb34
chrisd
parents: 16
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27 <data name="class" format="tabular" />
a54c93a53507 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 20f9d075eda4871b5ece73daa8705d4a6a27bb34
chrisd
parents: 16
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28 <data name="group" format="tabular" />
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c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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29 </outputs>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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30 <citations>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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31 </citations>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
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32 </tool>