Mercurial > repos > chrisd > resistome_analyzer

annotate resistome_analyzer.xml @ 5:12dcd63b996f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit 572d62295b0bb8f2fe9a3f484717ab52d4c93b39
author chrisd
date Sun, 09 Oct 2016 04:38:54 -0400
parents 431eaab8b903
children d67a1250153c
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
1 <tool id="resistome_analyzer" name="ResistomeAnalyzer" version="0.1.0">
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
2 <description>A simple tool for analyzing the resistome of metagenomic sequence data</description>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
3 <requirements>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
4 <requirement type="package" version="0.1">resistome_analyzer</requirement>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
5 </requirements>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
6 <stdio>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
7 <exit_code range="1:" />
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
8 </stdio>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
9 <command><![CDATA[
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
10 resistome
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
11 -ref_fp $reference
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
12 -annot_fp $annotation
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
13 -sam_fp $sam
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
14 -prefix $prefix
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
15 ]]></command>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
16 <inputs>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
17 <param type="data" name="reference" format="fasta" label="Reference sequence" />
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
18 <param type="data" name="sam" format="sam" label="SAM file" />
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
19 <param type="data" name="annotation" format="csv" label="Annotation file" />
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
20 </inputs>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
21 <outputs>
4
431eaab8b903 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit a053108c583eb0f24b47e88ec235747696f20ef0
chrisd
parents: 3
diff changeset
22 <data name="prefix" format="tabular" />
0
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
23 </outputs>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
24 <citations>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
25 </citations>
c590e36e113c planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/resistomeanalyzer commit d70c0260c1b03b3f27c18b4b6f31b5122a2c01c3
chrisd
parents:
diff changeset
26 </tool>