Mercurial > repos > chrisd > coverage_sampler
comparison coverage_sampler.xml @ 17:bce433e42d1e draft
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/gene_fraction commit 32a55afad4b912cf95b909cf60c6e62d7c04bbbd-dirty
| author | chrisd |
|---|---|
| date | Wed, 29 Jun 2016 02:52:17 -0400 |
| parents | 94b6db9db63c |
| children | 9dd9da093f21 |
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| 16:94b6db9db63c | 17:bce433e42d1e |
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| 67 | 67 |
| 68 ------ | 68 ------ |
| 69 | 69 |
| 70 **Options** | 70 **Options** |
| 71 | 71 |
| 72 -min This parameter specifies the starting sample level for the program. For example, a min value | 72 -min This parameter specifies the starting sample level for the program. For example, a min value |
| 73 of five tells the program to begin by taking five percent of alignments from the alignment file. | 73 of five tells the program to begin by taking five percent of alignments from the alignment file. |
| 74 | 74 |
| 75 -max This parameter specifies the ending sample level for the program. | 75 -max This parameter specifies the ending sample level for the program. |
| 76 | 76 |
| 77 -skip This parameter specifies the amount of levels to skip between min and max. For example, | 77 -skip This parameter specifies the amount of levels to skip between min and max. For example, |
| 78 if you specify a min value of five, a max value of 100, and a skip value of five, then | 78 if you specify a min value of five, a max value of 100, and a skip value of five, then |
| 79 you would be sampling alignments in intervals of five. | 79 you would be sampling alignments in intervals of five. |
| 80 | 80 |
| 81 -t This parameter specifies a threshold value. Only genes having a gene fraction greater than | 81 -t This parameter specifies a threshold value. Only genes having a gene fraction greater than |
| 82 this value are provided as output. | 82 this value are provided as output. |
| 83 | 83 |
| 84 -samples This parameter specifies the amount of iterations you would like to sample at. For example, | 84 -samples This parameter specifies the amount of iterations you would like to sample at. For example, |
| 85 a sample value of five would sample each level five times. | 85 a sample value of five would sample each level five times. |
| 86 | 86 |
| 87 ------ | 87 ------ |
| 88 | 88 |
| 89 **Output** | 89 **Output** |
| 90 | 90 |
| 106 | 106 |
| 107 Development is being done on github_ | 107 Development is being done on github_ |
| 108 | 108 |
| 109 .. _github: https://github.com/cdeanj/coverage_sampler | 109 .. _github: https://github.com/cdeanj/coverage_sampler |
| 110 | 110 |
| 111 ------ | |
| 112 | |
| 113 ]]> | 111 ]]> |
| 114 </help> | 112 </help> |
| 115 <citations> | 113 <citations> |
| 116 </citations> | 114 </citations> |
| 117 </tool> | 115 </tool> |