Mercurial > repos > chrisd > coverage_sampler
comparison coverage_sampler.xml @ 22:a286d65db469 draft
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/gene_fraction commit c21d5d2e0bbd31e8c35250d92d30f5471819f6e5-dirty
| author | chrisd |
|---|---|
| date | Wed, 29 Jun 2016 03:18:20 -0400 |
| parents | fad66d1d8bda |
| children | b0a92d97c485 |
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| 21:fad66d1d8bda | 22:a286d65db469 |
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| 68 ------ | 68 ------ |
| 69 | 69 |
| 70 **Options** | 70 **Options** |
| 71 | 71 |
| 72 - min This parameter specifies the starting sample level for the program. For example, a min value | 72 - min This parameter specifies the starting sample level for the program. For example, a min value |
| 73 | |
| 74 of five tells the program to begin by taking five percent of alignments from the alignment file. | 73 of five tells the program to begin by taking five percent of alignments from the alignment file. |
| 75 | 74 |
| 76 - max This parameter specifies the ending sample level for the program. | 75 - max This parameter specifies the ending sample level for the program. |
| 77 | 76 |
| 78 - skip This parameter specifies the amount of levels to skip between min and max. For example, | 77 - skip This parameter specifies the amount of levels to skip between min and max. For example, |
| 79 | |
| 80 if you specify a min value of five, a max value of 100, and a skip value of five, then | 78 if you specify a min value of five, a max value of 100, and a skip value of five, then |
| 81 | |
| 82 you would be sampling alignments in intervals of five. | 79 you would be sampling alignments in intervals of five. |
| 83 | 80 |
| 84 - t This parameter specifies a threshold value. Only genes having a gene fraction greater than | 81 - t This parameter specifies a threshold value. Only genes having a gene fraction greater than |
| 85 | |
| 86 this value are provided as output. | 82 this value are provided as output. |
| 87 | 83 |
| 88 - samples This parameter specifies the amount of iterations you would like to sample at. For example, | 84 - samples This parameter specifies the amount of iterations you would like to sample at. For example, |
| 89 | |
| 90 a sample value of five would sample each level five times. | 85 a sample value of five would sample each level five times. |
| 91 | 86 |
| 92 ------ | 87 ------ |
| 93 | 88 |
| 94 **Output** | 89 **Output** |