# HG changeset patch
# User charles_s_test
# Date 1510496047 18000
# Node ID 09e4f955e00a50033235f815e333cf01faafc480
# Parent  500ceb70e4bdae8d14e901021ac986d21dd6dbd2
planemo upload commit d4d558b27a09f684be8311f3cfb659b16545e167-dirty

diff -r 500ceb70e4bd -r 09e4f955e00a fastq_dump_paired.xml
--- a/fastq_dump_paired.xml	Sun Nov 12 09:12:36 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,54 +0,0 @@
-<tool id="testdep" name="Test Dep" version="1.1.4">
-    <description>Downloads a set of paired reads by their accession number using fastq-dump tool from sra-toolkit.</description>
-    <requirements>
-       <!-- Should just use the samtools that's installed in the path -->
-       <requirement type="binary">fastq-dump</requirement>
-    </requirements>
-  <command interpreter="python2.7">    
-
-	testdep.py ${input1}
-
-   </command>
-    <inputs>
-      <param format="fastq,fastqsanger" name="input1" multiple="true" type="data" label="Source file"/>
-	</inputs>
-    <outputs>
-	 <data name="text_file" format="txt" from_work_dir="dep_result.txt"/>   
-
-	</outputs> 
-    <tests>
-    <!-- Empty -->
-    </tests>
-
-    <help>
-
-.. class:: infomark
-
-**What it does**
-
-Performs a fastq-dump with the split-3 option.
-
-::
-
-  fastq-dump —log-level fatal --split-3 --accession accession_number --ncbi_error_report never
-
-
-Data is stored in format fastqsanger. 
-
-The metadata is now named to make it easier for collection lists to
-fetch when you search for reads in your history. 
-
-------
-
-.. class:: infomark
-
-Modifed By 
-Charles Strittmatter
-
-
-**Original Tool Author**
-
-Mando Rodriguez
-
-    </help>
-</tool>