Mercurial > repos > charles_s_test > seqsero_v2
comparison seqsero2.xml @ 3:62f8b9e226c2 draft default tip
planemo upload commit 9b152b4a900a8cd70df992da881c7e3fa00d4e4c-dirty
| author | charles_s_test |
|---|---|
| date | Thu, 21 Dec 2017 11:06:32 -0500 |
| parents | 4108dddd7278 |
| children |
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| 2:4108dddd7278 | 3:62f8b9e226c2 |
|---|---|
| 12 <command detect_errors="exit_code"><![CDATA[ | 12 <command detect_errors="exit_code"><![CDATA[ |
| 13 | 13 |
| 14 ln -s $fastq1 sample_1.fastq; | 14 ln -s $fastq1 sample_1.fastq; |
| 15 ln -s $fastq2 sample_2.fastq; | 15 ln -s $fastq2 sample_2.fastq; |
| 16 | 16 |
| 17 #for $name in $collect_param.keys()# $f[$name] #end for# | 17 |
| 18 | 18 |
| 19 $__tool_directory__/SeqSero2.py | 19 $__tool_directory__/SeqSero2.py |
| 20 -p $numofthr | 20 -p $numofthr |
| 21 -i sample_1.fastq sample_2.fastq | 21 -i sample_1.fastq sample_2.fastq |
| 22 -b $maptype; | 22 -b $maptype; |
