diff libs/compare_and_change_two_fastq_id.py @ 0:6895de35a263 draft

planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/libs/compare_and_change_two_fastq_id.py	Thu Oct 19 18:16:51 2017 -0400
@@ -0,0 +1,27 @@
+#!/usr/bin/env python
+
+import os,sys
+file1=sys.argv[1]
+file2=sys.argv[2]
+
+
+def compare_and_change_two_fastq_id(file1,file2):
+  a=os.popen("head "+file1).read().split("\n")
+  b=os.popen("head "+file2).read().split("\n")
+  for x in a:
+    if x.startswith("@"):
+      a_title=x.split(" ")[0]
+  for x in b:
+    if x.startswith("@"):
+      b_title=x.split(" ")[0]
+  if a_title==b_title:
+    pass
+  else:
+    print "changing the title of two seperated fastq files..."
+    print a_title,b_title
+    os.system("sed "+"-i 's/.1 / /g' "+file1)
+    print "finished file1"
+    os.system("sed "+"-i 's/.2 / /g' "+file2)
+    print "finished file2"
+
+compare_and_change_two_fastq_id(file1,file2) 
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