Mercurial > repos > charles_s_test > seqsero2

diff run_seqsero.py @ 10:53efef402c51 draft

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planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
author charles_s_test
date Wed, 29 Nov 2017 08:34:19 -0500
parents acc5cd06a36a
children
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line diff
--- a/run_seqsero.py	Tue Nov 28 21:16:36 2017 -0500
+++ b/run_seqsero.py	Wed Nov 29 08:34:19 2017 -0500
@@ -96,9 +96,9 @@
         for run in run2fastqs:
                 seqsero_cmd = []
                 if len(run2fastqs[run]) == 2:
-                        seqsero_cmd = ['python', seqsero, '-m', '2', '-i', run2fastqs[run][0], run2fastqs[run][1]]
+                        seqsero_cmd = ['python2.7', seqsero, '-m', '2', '-i', run2fastqs[run][0], run2fastqs[run][1]]
                 elif len(run2fastqs[run]) == 1:
-                        seqsero_cmd = ['python', seqsero, '-m', '1', '-i', run2fastqs[run][0]]
+                        seqsero_cmd = ['python2,7', seqsero, '-m', '1', '-i', run2fastqs[run][0]]
                 p = Popen(seqsero_cmd, stdout=PIPE)
                 output = p.communicate()
                 outputs.append(output)