Mercurial > repos > charles_s_test > seqsero2
diff libs/sratoolkit.2.8.0-centos_linux64/schema/sra/nanopore.vschema @ 3:38ad1130d077 draft
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
author | charles_s_test |
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date | Mon, 27 Nov 2017 11:21:07 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/libs/sratoolkit.2.8.0-centos_linux64/schema/sra/nanopore.vschema Mon Nov 27 11:21:07 2017 -0500 @@ -0,0 +1,84 @@ +/*=========================================================================== + * + * PUBLIC DOMAIN NOTICE + * National Center for Biotechnology Information + * + * This software/database is a "United States Government Work" under the + * terms of the United States Copyright Act. It was written as part of + * the author's official duties as a United States Government employee and + * thus cannot be copyrighted. This software/database is freely available + * to the public for use. The National Library of Medicine and the U.S. + * Government have not placed any restriction on its use or reproduction. + * + * Although all reasonable efforts have been taken to ensure the accuracy + * and reliability of the software and data, the NLM and the U.S. + * Government do not and cannot warrant the performance or results that + * may be obtained by using this software or data. The NLM and the U.S. + * Government disclaim all warranties, express or implied, including + * warranties of performance, merchantability or fitness for any particular + * purpose. + * + * Please cite the author in any work or product based on this material. + * + * =========================================================================== + * + */ + +/*========================================================================== + * NCBI Oxford Nanopore Sequence Read Archive schema + */ +version 1; + +include 'insdc/sra.vschema'; +include 'ncbi/sra.vschema'; + + +/*-------------------------------------------------------------------------- + * NCBI:SRA:Nanopore:consensus + * Oxford Nanopore SRA Platform + */ +table NCBI:SRA:Nanopore:consensus #1 + = NCBI:SRA:tbl:sra #2.1.3 + , NCBI:tbl:base_space #2.0.3 + , NCBI:tbl:phred_quality #2.0.3 +{ + extern column < U32 > izip_encoding #1 CHANNEL; + + extern column < U32 > izip_encoding #1 READ_NUMBER; + + extern column bool_encoding #1 HIGH_QUALITY; + + ascii platform_name + = < ascii > echo < "OXFORD_NANOPORE" > (); + + INSDC:SRA:platform_id out_platform + = < INSDC:SRA:platform_id > echo < SRA_PLATFORM_OXFORD_NANOPORE > (); +} + + +/*-------------------------------------------------------------------------- + * NCBI:SRA:Nanopore:sequence + * Oxford Nanopore SRA Platform + */ +table NCBI:SRA:Nanopore:sequence #1 + = NCBI:SRA:tbl:sra #2.1.3 + , NCBI:tbl:base_space #2.0.3 + , NCBI:tbl:phred_quality #2.0.3 +{ + extern column < U32 > izip_encoding #1 CHANNEL; + + extern column < U32 > izip_encoding #1 READ_NUMBER; + + ascii platform_name + = < ascii > echo < "OXFORD_NANOPORE" > (); + + INSDC:SRA:platform_id out_platform + = < INSDC:SRA:platform_id > echo < SRA_PLATFORM_OXFORD_NANOPORE > (); +} + + +database NCBI:SRA:Nanopore:db #1 +{ + table NCBI:SRA:Nanopore:sequence #1.0 SEQUENCE; + table NCBI:SRA:Nanopore:consensus #1.0 CONSENSUS; +};