Mercurial > repos > charles_s_test > seqsero2

diff libs/BWA_analysis_O_new_dependent.py @ 3:38ad1130d077 draft

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planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
author charles_s_test
date Mon, 27 Nov 2017 11:21:07 -0500
parents 0d65b71ff8df
children 3d6680af0bec
line wrap: on
line diff
--- a/libs/BWA_analysis_O_new_dependent.py	Sun Nov 12 02:27:32 2017 -0500
+++ b/libs/BWA_analysis_O_new_dependent.py	Mon Nov 27 11:21:07 2017 -0500
@@ -9,8 +9,8 @@
 
 BwaPath="bwa"
 SamTlsPth="samtools"
-Makebltdb="/nfs/sw/apps/blast/ncbi-blast-2.6.0+/bin/makeblastdb"
-Blastnpth="/nfs/sw/apps/blast/ncbi-blast-2.6.0+/bin/blastn"
+Makebltdb="makeblastdb"
+Blastnpth="blastn"
 
 def BWA_O_analysis(sra_name,additional_file,database,mapping_mode,file_mode):
   if file_mode=="1":#interleaved