Mercurial > repos > charles_s_test > seqsero2

comparison libs/compare_and_change_two_fastq_id.py @ 10:53efef402c51 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
author charles_s_test
date Wed, 29 Nov 2017 08:34:19 -0500
parents 3d6680af0bec
children
comparison
equal deleted inserted replaced
9:acc5cd06a36a 10:53efef402c51
15 if x.startswith("@"): 15 if x.startswith("@"):
16 b_title=x.split(" ")[0] 16 b_title=x.split(" ")[0]
17 if a_title==b_title: 17 if a_title==b_title:
18 pass 18 pass
19 else: 19 else:
20 print("changing the title of two seperated fastq files...") 20 print "changing the title of two seperated fastq files..."
21 print(a_title,b_title) 21 print a_title,b_title
22 os.system("sed "+"-i 's/.1 / /g' "+file1) 22 os.system("sed "+"-i 's/.1 / /g' "+file1)
23 print("finished file1") 23 print "finished file1"
24 os.system("sed "+"-i 's/.2 / /g' "+file2) 24 os.system("sed "+"-i 's/.2 / /g' "+file2)
25 print("finished file2") 25 print "finished file2"
26 26
27 compare_and_change_two_fastq_id(file1,file2) 27 compare_and_change_two_fastq_id(file1,file2)