Mercurial > repos > charles_s_test > seqsero2

comparison run_seqsero_batch_galaxy.py @ 3:38ad1130d077 draft

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planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
author charles_s_test
date Mon, 27 Nov 2017 11:21:07 -0500
parents 0d65b71ff8df
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2:0d65b71ff8df 3:38ad1130d077
11 from subprocess import Popen, PIPE 11 from subprocess import Popen, PIPE
12 from sqlalchemy import * 12 from sqlalchemy import *
13 from datetime import datetime 13 from datetime import datetime
14 14
15 print 'monkey found some files', sys.argv 15 print 'monkey found some files', sys.argv
16 engine = create_engine('postgresql+psycopg2://galaxy:cF$cl0udh9c@galaxydev.cvkyaz9id4ml.us-east-1.rds.amazonaws.com:5432/galaxy') 16 engine = create_engine('postgresql+psycopg2://galaxy:cF$cl0udh9c@galaxyprod.cvkyaz9id4ml.us-east-1.rds.amazonaws.com:5432/galaxy')
17 print 'monkey says "vroom vroom"' 17 print 'monkey says "vroom vroom"'
18 connection = engine.connect() 18 connection = engine.connect()
19 print "monkey made a connection!" 19 print "monkey made a connection!"
20 20
21 # database = '/nfs/sw/apps/galaxy-dev/galaxy/database/universe.sqlite' 21 # database = '/nfs/sw/apps/galaxy-dev/galaxy/database/universe.sqlite'