Mercurial > repos > charles_s_test > seqsero2

comparison libs/H_combination_output_analysis.py @ 3:38ad1130d077 draft

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planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
author charles_s_test
date Mon, 27 Nov 2017 11:21:07 -0500
parents 6895de35a263
children 3d6680af0bec
comparison
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2:0d65b71ff8df 3:38ad1130d077
8 import sys 8 import sys
9 from Bio.Blast import NCBIXML 9 from Bio.Blast import NCBIXML
10 from Initial_Conditions import phase1 10 from Initial_Conditions import phase1
11 from Initial_Conditions import phase2 11 from Initial_Conditions import phase2
12 12
13 Makebltdb="/nfs/sw/apps/blast/ncbi-blast-2.6.0+/bin/makeblastdb" 13 Makebltdb="makeblastdb"
14 Blastxpth="/nfs/sw/apps/blast/ncbi-blast-2.6.0+/bin/blastx" 14 Blastxpth="blastx"
15 15
16 target=sys.argv[1] 16 target=sys.argv[1]
17 database_fliC=sys.argv[2] 17 database_fliC=sys.argv[2]
18 database_fljB=sys.argv[3] 18 database_fljB=sys.argv[3]
19 output=target.split('.')[0]+'_out.fasta' 19 output=target.split('.')[0]+'_out.fasta'