Mercurial > repos > charles_s_test > seqsero2
annotate libs/Util.py @ 5:d6ba84c5c4db draft
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
author | charles_s_test |
---|---|
date | Mon, 27 Nov 2017 12:45:37 -0500 |
parents | 38ad1130d077 |
children |
rev | line source |
---|---|
3
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
1 class util: |
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
2 def BWApath(self,path="bwa"): |
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
3 self.path=path |
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
4 def Blastnpath(self,path="blastn"): |
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
5 self.path=path |
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
6 def SRApath(self,path): |
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
7 self.path=path |
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
8 def Samtoolspath(self,path="samtools"): |
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
9 self.path=path |
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
10 def Makeblstdbpath(self,path="makeblastdb"): |
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
11 self.path=path |
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
12 |
38ad1130d077
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
charles_s_test
parents:
diff
changeset
|
13 |