diff test_bioblend.py @ 2:381e1e7109fc draft default tip

planemo upload commit 464b391afaa5819bc681452e85bea9d882730eb6-dirty

--- a/test_bioblend.py	Fri Oct 27 17:22:36 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,49 +0,0 @@
-#/usr/bin/python
-
-import sqlite3, re, os
-from bioblend import galaxy
-
-#out = open("/opt/galaxy/tools/seqserobatch/test.txt", 'w')
-
-def get_bioblend_id():
-#	gi = galaxy.GalaxyInstance(url='http://galaxy.fda.gov:8080/', key='ebec9b999774b69d3f3880f0f664f56e')
-	gi = galaxy.GalaxyInstance(url='https://dev.galaxytrakr.org/')
-	job = galaxy.jobs.JobsClient(gi)
-	j = job.get_jobs()
-	while j[0]['exit_code'] == 'None':
-		print j[0]['id'], j[0]['exit_code']
-	print j[0]['id'], j[0]['exit_code']
-	
-#	dataset_id = galaxy.datasets.DatasetClient(gi)
-#	output = show_stdout(dataset_id)
-#	print output
-#	data = download_dataset(dataset_id, wait_for_completion=True)
-#	print dataset_id.show_stdout()
-	#print gi, job
-
-#	print '"'+'tiger'+'"'
-	return j[0]['id']
-
-def get_job_id(bioblend_id):
-#	print 'supermonkey', bioblend_id
-	database = '/opt/galaxy/database/universe.sqlite'
-	conn = sqlite3.connect(database)
-	select = 'SELECT job.id, job.stdout FROM job WHERE job.stdout LIKE '+"'"+"%"+bioblend_id+"%"+"'"+';'
-#	print select
-#	entries = conn.execute('SELECT job.id, job.stdout FROM job WHERE job.stdout LIKE '+"'"+"%"+bioblend_id+"%"+"'"+';')
-	entries = conn.execute('SELECT job.id, job.stdout FROM job WHERE job.stdout LIKE '+"'"+"%ecbc86ac41da8f7b%"+"'"+';')
-	print type(entries)
-	print entries
-	print select
-	for entry in entries:
-		print entry
-		for line in entry:
-			line = str(line)
-			print line
-#	print entries
-
-#out.write(j_join)
-
-bioblend_id = get_bioblend_id()
-#print bioblend_id
-#get_job_id(bioblend_id)