seqsero: libs/split_interleaved

annotate libs/split_interleaved_fastq.pl @ 2:381e1e7109fc draft default tip

planemo upload commit 464b391afaa5819bc681452e85bea9d882730eb6-dirty

author	charles_s_test
date	Sun, 12 Nov 2017 02:26:17 -0500
parents	8db411fab3e1
children

rev	line source
0 8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	1 #!/usr/bin/perl-w
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	2
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	3 use strict;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	4
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	5 use warnings;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	6
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	7 use Getopt::Long;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	8
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	9 use Pod::Usage;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	10
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	11 use File::Basename;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	12
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	13 # Date: 14-05-2010
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	14
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	15 # This program takes a fastq file containing paired-end reads in interleaved format as input and returns two separate files containing read 1 and read 2 in the correct order.
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	16
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	17 # Author: Ram Vinay Pandey
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	18
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	19
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	20
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	21 # Define the variables
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	22
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	23 my $input="";
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	24
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	25 my $output="";
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	26
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	27 my $help=0;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	28
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	29 my $test=0;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	30
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	31 my $verbose=1;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	32
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	33
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	34
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	35 my $usage="perl $0 --input interleaved_fastq_file.fastq --output output.fastq\n";
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	36
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	37
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	38
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	39 GetOptions(
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	40
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	41 "input=s" =>\$input,
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	42
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	43 "output=s" =>\$output,
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	44
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	45 "test" =>\$test,
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	46
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	47 "help" =>\$help
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	48
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	49 ) or pod2usage(-msg=>"Wrong options",-verbose=>1);
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	50
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	51
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	52
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	53 pod2usage(-verbose=>2) if $help;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	54
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	55 Test::runTests() if $test;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	56
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	57
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	58
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	59 pod2usage(-msg=>"\n\tProvide an input file!!\n\n\t\t$usage\n\n",-verbose=>1) unless -e $input;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	60
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	61 pod2usage(-msg=>"\n\tProvide an output file!!\n\n\t\t$usage\n\n",-verbose=>1) unless $output;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	62
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	63
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	64
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	65
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	66
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	67 my ( $name, $path, $extension ) = File::Basename::fileparse ( $output, '\..*' );
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	68
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	69 my $output1 = $name."-read1.fastq";
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	70
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	71 my $output2 = $name."-read2.fastq";
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	72
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	73
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	74
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	75 open my $ofh1, ">$output1" or die "Could not open output file";
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	76
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	77 open my $ofh2, ">$output2" or die "Could not open output file";
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	78
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	79
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	80
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	81
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	82
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	83 open (IN, "<$input") or die ("Could not open file $input for reading\n");
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	84
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	85
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	86
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	87 while (<IN>) {
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	88
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	89 chomp;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	90
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	91 s/\r/\n/g;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	92
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	93 # discard blank line
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	94
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	95 if (m/^\s*$/g) {
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	96
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	97 next;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	98
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	99 }
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	100
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	101 else {
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	102
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	103 # Reading all lines for read 1
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	104
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	105 if (m/^\s\@.1$/) {
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	106
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	107
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	108
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	109 print $ofh1 "$_\n";
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	110
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	111 my $ct=0;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	112
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	113 while(my $l = <IN>) {
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	114
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	115
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	116
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	117 $ct++;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	118
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	119 chomp $l;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	120
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	121 s/\r/\n/g;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	122
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	123 print $ofh1 "$l\n";
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	124
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	125
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	126
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	127 last if($ct ==3);
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	128
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	129
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	130
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	131 }
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	132
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	133
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	134
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	135 }
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	136
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	137 # Reading all lines for read 2
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	138
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	139 if (m/^\s\@.2$/) {
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	140
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	141
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	142
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	143 print $ofh2 "$_\n";
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	144
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	145 my $ct=0;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	146
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	147 while(my $l = <IN>) {
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	148
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	149
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	150
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	151 $ct++;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	152
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	153 chomp $l;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	154
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	155 s/\r/\n/g;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	156
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	157 print $ofh2 "$l\n";
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	158
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	159
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	160
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	161 last if($ct ==3);
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	162
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	163 }
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	164
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	165
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	166
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	167
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	168
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	169 }
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	170
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	171
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	172
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	173 }
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	174
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	175 }
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	176
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	177
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	178
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	179 close IN;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	180
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	181 close $ofh1;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	182
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	183 close $ofh2;
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	184
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	185
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	186
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	187
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	188
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	189
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	190
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	191 =head1 NAME
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	192
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	193
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	194
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	195 split-interleaved-fastq.pl - TThis program takes a fastq file containing paired-end reads in interleaved format as input and returns two separate files containing read 1 and read 2 in the correct order.
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	196
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	197
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	198
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	199 =head1 SYNOPSIS
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	200
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	201
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	202
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	203 perl split-interleaved-fastq.pl --input interleaved_fastq_file.fastq --output output.fastq
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	204
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	205
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	206
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	207 =head1 OPTIONS
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	208
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	209
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	210
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	211 =over 4
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	212
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	213
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	214
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	215 =item B<--input>
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	216
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	217
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	218
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	219 The input file which contains read1 and read2 in a single file in FASTQ format. Mandatory parameter
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	220
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	221
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	222
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	223 =item B<--output>
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	224
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	225
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	226
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	227 The output file. Mandatory parameter
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	228
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	229
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	230
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	231 =item B<--help>
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	232
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	233
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	234
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	235 Display help for this script
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	236
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	237
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	238
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	239 =back
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	240
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	241
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	242
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	243 =head1 Details
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	244
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	245
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	246
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	247 =head2 Input
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	248
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	249
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	250
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	251 The paired-end reads in interleaved format; input file looks like following:
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	252
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	253
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	254
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	255 @fc_HWUSI-EAS613R:1:1:4:682#CATA/1
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	256
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	257 TTGTANGATTTCGTCCAGACTTATCTGGAGCATCCGGACGGTCGGGTGAAGCTCAATCCTCAGCTGGTGTTG
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	258
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	259 +fc_HWUSI-EAS613R:1:1:4:682#CATA/1
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	260
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	261 baaa\DVbbbbaaaaa`[`abaaaab`b`]aab]_aaa``Z^`a[SN^QR^`]___aXK[a\T\[UTWWMZV
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	262
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	263 @fc_HWUSI-EAS613R:1:1:4:682#CATA/2
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	264
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	265 TCGACAGCTGCTGCTCCGTATTGAGGTACGGATCGTTCACGATCATATACGCCCTCTCTTTCAAAAACCTCA
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	266
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	267 +fc_HWUSI-EAS613R:1:1:4:682#CATA/2
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	268
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	269 bbbY`[`a\S_Y][XPaUDZ__LLL]TZPWXBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	270
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	271
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	272
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	273 =head2 Output
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	274
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	275
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	276
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	277 The output looks like as following for reads 1:
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	278
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	279
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	280
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	281 @fc_HWUSI-EAS613R:1:1:4:682#CATA/1
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	282
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	283 TTGTANGATTTCGTCCAGACTTATCTGGAGCATCCGGACGGTCGGGTGAAGCTCAATCCTCAGCTGGTGTTG
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	284
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	285 +fc_HWUSI-EAS613R:1:1:4:682#CATA/1
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	286
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	287 baaa\DVbbbbaaaaa`[`abaaaab`b`]aab]_aaa``Z^`a[SN^QR^`]___aXK[a\T\[UTWWMZV
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	288
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	289
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	290
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	291 The output looks like as following for reads 2:
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	292
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	293
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	294
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	295 @fc_HWUSI-EAS613R:1:1:4:682#CATA/2
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	296
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	297 TCGACAGCTGCTGCTCCGTATTGAGGTACGGATCGTTCACGATCATATACGCCCTCTCTTTCAAAAACCTCA
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	298
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	299 +fc_HWUSI-EAS613R:1:1:4:682#CATA/2
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	300
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	301 bbbY`[`a\S_Y][XPaUDZ__LLL]TZPWXBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	302
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	303
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	304
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	305
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	306
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	307 =head1 AUTHORS
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	308
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	309
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	310
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	311 Ram vinay pandey
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	312
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	313
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	314
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	315 =cut
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	316
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty charles_s_test parents: diff changeset	317

Mercurial > repos > charles_s_test > seqsero

annotate libs/split_interleaved_fastq.pl @ 2:381e1e7109fc draft default tip