diff TrustStoreGalaxyImport.xml @ 30:c659bd6342ae

Fix deps.

--- a/TrustStoreGalaxyImport.xml	Thu Jan 23 10:21:58 2014 +1100
+++ b/TrustStoreGalaxyImport.xml	Thu Jan 23 10:36:03 2014 +1100
@@ -1,4 +1,4 @@
-<tool id="ts_import_1" name="Import Data from TrustStore" vertion="0.1"> <!-- tool_type="data_source"> -->
+<tool id="ts_import_1" name="Import Data from TrustStore" vertion="0.1" force_history_refresh="True"> <!-- tool_type="data_source"> -->
     <description> secure cloud storage.</description>
     <stdio>
         <exit_code range="2" err_level="fatal" description="Could not find store with supplied name." />
@@ -6,7 +6,7 @@
         <exit_code range="4" err_level="fatal" description="Could not find supplied filename in store at path." />
         <exit_code range="5" err_level="fatal" description="Bad credentials supplied. See stdout for more information." />
     </stdio>
-    <command interpreter="python">TrustStoreGalaxyImport.py https://tstest-kms.it.csiro.au/kmscolab_3_0 https://tstest-ims.it.csiro.au/ims_3_0/services/IMS $username $password desktop cpU92F1PT7VOCANjSknuCDp4DrubmujoBaF6b0miz8OpKNokEbGMHCaSFK5/lISbBmaaGVCgeADI2A39F3Hkeg== $storename $path $filename $output</command>
+    <command interpreter="python">TrustStoreGalaxyImport.py https://tstest-kms.it.csiro.au/kmscolab_3_0 https://tstest-ims.it.csiro.au/ims_3_0/services/IMS $username $password desktop cpU92F1PT7VOCANjSknuCDp4DrubmujoBaF6b0miz8OpKNokEbGMHCaSFK5/lISbBmaaGVCgeADI2A39F3Hkeg== $storename $path $filename $output1 $output1.id $file_type $__new_file_path__</command>
     <inputs>
         <param name="file_type" type="select" label="File Format" help="Which format is the data you're downloading?">
             <option value="just list files"/>
@@ -67,10 +67,10 @@
         <!-- <param name="client_secret" type="text" label="client secret" help="kms client secret" value="somesecret" size="20" /> -->
         <param name="storename" type="text" label="Store Name" help="e.g.: My Galaxy Store" value="galaxy" size="20" />
         <param name="path" type="text" label="Path in Store" help="e.g.: /rawdata/feb2014/, leave as / for top level files" value="/" size="20" />
-        <param name="filename" type="text" label="Filename" help="e.g.: export1.bam. Leave empty if 'just list files' is chosen above." value="" size="20" />
+        <param name="filename(s)" type="text" label="Filename" help="e.g.: export1.bam,export2.bam Comma seperated. Leave empty if 'just list files' is chosen above." value="" size="40" />
     </inputs>
     <outputs>
-        <data name="output" format="txt">
+        <data name="output1" format="txt">
             <change_format>
                 <when input="file_type" value="ab1" format="ab1" />
                 <when input="file_type" value="axt" format="axt" />
@@ -113,7 +113,7 @@
     </tests>
 
     <requirements>
-        <requirement type="package" version="0.2">py_ts</requirement>
+        <requirement type="package" version="0.2.2">py_ts</requirement>
         <requirement type="python_module">py_ts</requirement>
         <requirement type="binary" version="1.0.0">openssl</requirement>
     </requirements>