comparison TrustStoreGalaxyImport.py @ 24:7b1720b6acf2

remove extra files
author Catherine Wise <catherine.wise@csiro.au>
date Tue, 14 Jan 2014 15:49:55 +1100
parents cf4cf95e6678
children 20dc961b7949
comparison
equal deleted inserted replaced
23:cf4cf95e6678 24:7b1720b6acf2
1 import sys 1 import sys
2 import shutil 2 import shutil
3 import gzip 3 import gzip
4 import tempfile 4 import tempfile
5 import os
5 from py_ts import TrustStoreClient, ts_utils 6 from py_ts import TrustStoreClient, ts_utils
6 from galaxy.datatypes.checkers import * 7 from galaxy.datatypes.checkers import *
7 8
8 def printNice(elem, f, depth): 9 def printNice(elem, f, depth):
9 try: 10 try:
80 os.write(fd, chunk) 81 os.write(fd, chunk)
81 os.close(fd) 82 os.close(fd)
82 gzipped_file.close() 83 gzipped_file.close()
83 84
84 shutil.copy(uncompressed, outputFile) 85 shutil.copy(uncompressed, outputFile)
86 try:
87 os.remove(uncompressed)
88 except OSError:
89 pass
85 else: 90 else:
86 shutil.copy(download, outputFile) 91 shutil.copy(download, outputFile)
87 else: 92 else:
88 print "File not found" 93 print "File not found"
89 sys.exit(4) 94 sys.exit(4)