comparison TrustStoreGalaxyBrowse.py @ 31:e4c13ce69e25

More helpful output.

30:0a6dd98baf53

    json_params = None
    metadata_path = None
    all_params = None
    with open(properties_file, 'r') as file_:
        settings = file_.read()
        print(settings)
        all_params = json.loads(settings)
        json_params = all_params.get("param_dict")
        metadata_path = all_params["job_config"]["TOOL_PROVIDED_JOB_METADATA_FILE"]

    output_filename = json_params.get('output', None)

    if root is not None:
        with open(metadata_path, 'wb') as metadata_file:
            for path in paths:
                locations = utils.Navigation.files_at_path(root, path)
                for location in locations:
                    if not locations:
                        print("Path not found: " + path)
                        continue
                    filename = "".join(c in SAFE_CHARS and c or '-' for c in location.name)
                    extension = os.path.splitext(filename)[1]
                    name = construct_multi_filename(hda_id, filename, extension)
                    target_output_filename = None
                    if first:

31:e4c13ce69e25

    json_params = None
    metadata_path = None
    all_params = None
    with open(properties_file, 'r') as file_:
        settings = file_.read()
        all_params = json.loads(settings)
        json_params = all_params.get("param_dict")
        metadata_path = all_params["job_config"]["TOOL_PROVIDED_JOB_METADATA_FILE"]

    output_filename = json_params.get('output', None)

    if root is not None:
        with open(metadata_path, 'wb') as metadata_file:
            for path in paths:
                locations = utils.Navigation.files_at_path(root, path)
                for location in locations:
                    if not location:
                        print("Path not found: " + path)
                        continue
                    else:
                        print("Downloading file... " + location.name)
                    filename = "".join(c in SAFE_CHARS and c or '-' for c in location.name)
                    extension = os.path.splitext(filename)[1]
                    name = construct_multi_filename(hda_id, filename, extension)
                    target_output_filename = None
                    if first: