Mercurial > repos > cathywise > truststore_browse_testing

comparison TrustStoreGalaxyBrowse.py @ 13:11344d545e88

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author Catherine Wise <catherine.wise@csiro.au>
date Wed, 13 May 2015 10:30:45 +1000
parents 16b0ceecf1f7
children 589f9250e30f
comparison
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12:47156a7b3440 13:11344d545e88
99 properties_file = sys.argv[1] 99 properties_file = sys.argv[1]
100 ouput_root = sys.argv[2] 100 ouput_root = sys.argv[2]
101 json_params = None 101 json_params = None
102 metadata_path = None 102 metadata_path = None
103 with open(properties_file, 'r') as file_: 103 with open(properties_file, 'r') as file_:
104 all_params = json.loads(file_.read()) 104 settings = file_.read()
105 print(settings)
106 all_params = json.loads(settings)
105 json_params = all_params.get("param_dict") 107 json_params = all_params.get("param_dict")
106 metadata_path = all_params["job_config"]["TOOL_PROVIDED_JOB_METADATA_FILE"] 108 metadata_path = all_params["job_config"]["TOOL_PROVIDED_JOB_METADATA_FILE"]
107 109
108 output_filename = json_params.get('output', None) 110 output_filename = json_params.get('output', None)
109 output_data = json_params.get('output_data') 111 output_data = json_params.get('output_data')