Mercurial > repos > cathywise > truststore_browse
comparison TrustStoreGalaxyBrowse.py @ 11:9ada74e8915e
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| author | Wise, Catherine (Digital, Acton) <Catherine.Wise@csiro.au> |
|---|---|
| date | Thu, 25 Jun 2015 08:41:33 +1000 |
| parents | 7301c2e96fce |
| children | 0c3f64e3c8ff |
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| 10:7301c2e96fce | 11:9ada74e8915e |
|---|---|
| 191 target_output_filename = file_name | 191 target_output_filename = file_name |
| 192 dataset = "new_primary_dataset" | 192 dataset = "new_primary_dataset" |
| 193 first = False | 193 first = False |
| 194 else: | 194 else: |
| 195 target_output_filename = os.path.normpath(os.path.join(extra_files_path, name)) | 195 target_output_filename = os.path.normpath(os.path.join(extra_files_path, name)) |
| 196 ext = sniff.handle_uploaded_dataset_file(filename, datatypes_registry, ext=ext) | |
| 197 metadata_file.write( | |
| 198 metadata_to_json(dataset_id, target_output_filename, name, ext, data_type)) | |
| 199 download = truststore.getFile(store, location) | 196 download = truststore.getFile(store, location) |
| 200 if download is None: | 197 if download is None: |
| 201 print("File %s not found." % location.name) | 198 print("File %s not found." % location.name) |
| 202 sys.exit(4) | 199 sys.exit(4) |
| 203 ungzip(download, target_output_filename) | 200 ungzip(download, target_output_filename) |
| 201 ext = sniff.handle_uploaded_dataset_file(target_output_filename, datatypes_registry, ext=ext) | |
| 202 metadata_file.write( | |
| 203 metadata_to_json(dataset_id, target_output_filename, name, ext, data_type)) | |
| 204 else: | 204 else: |
| 205 print("Store is damaged or we don't have sufficient access.") | 205 print("Store is damaged or we don't have sufficient access.") |
| 206 sys.exit(4) | 206 sys.exit(4) |
| 207 | 207 |
| 208 | 208 |