comparison TrustStoreGalaxyBrowse.py @ 20:91bad9ac39c6

This is giving me a headache.

19:bae7471a4741

                    name = construct_multi_filename(hda_id, filename, extension)
                    target_output_filename = None
                    data_type = "new_primary_dataset"
                    target_output_filename = os.path.normpath(os.path.join(extra_files_path, name))
                    download = truststore.getFile(store, location)
                    if download is None:
                        print("File %s not found." % location.name)
                        sys.exit(4)
                    if first:
                        first = False
                        target_output_filename = download
                    ungzip(download, target_output_filename)
                    # ext = sniff.handle_uploaded_dataset_file(target_output_filename, datatypes_registry, ext=ext)
                    # print("Guessed file type: " + ext)
                    print("in file: " + properties_file)
                    metadata_file.write(
                        metadata_to_json(dataset_id, target_output_filename, name, extension, data_type))
    else:
        print("Store is damaged or we don't have sufficient access.")
        sys.exit(4)

20:91bad9ac39c6

                    name = construct_multi_filename(hda_id, filename, extension)
                    target_output_filename = None
                    data_type = "new_primary_dataset"
                    target_output_filename = os.path.normpath(os.path.join(extra_files_path, name))
                    download = truststore.getFile(store, location)
                    primary = first
                    if download is None:
                        print("File %s not found." % location.name)
                        sys.exit(4)
                    if first:
                        first = False
                        target_output_filename = file_name
                        data_type = "dataset"
                    ungzip(download, target_output_filename)
                    metadata_file.write(
                        metadata_to_json(dataset_id, target_output_filename, name, extension, data_type, primary=primary))
                    # ext = sniff.handle_uploaded_dataset_file(target_output_filename, datatypes_registry, ext=ext)
                    # print("Guessed file type: " + ext)
    else:
        print("Store is damaged or we don't have sufficient access.")
        sys.exit(4)