Mercurial > repos > cathywise > truststore_browse
comparison TrustStoreGalaxyBrowse.py @ 15:8b88de25dd2c
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| author | Wise, Catherine (Digital, Acton) <Catherine.Wise@csiro.au> |
|---|---|
| date | Thu, 25 Jun 2015 09:54:07 +1000 |
| parents | c7287129f37f |
| children | bc3e29a97709 |
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| 14:c7287129f37f | 15:8b88de25dd2c |
|---|---|
| 185 filename = "".join(c in SAFE_CHARS and c or '-' for c in location.name) | 185 filename = "".join(c in SAFE_CHARS and c or '-' for c in location.name) |
| 186 extension = os.path.splitext(filename)[1].strip(".") | 186 extension = os.path.splitext(filename)[1].strip(".") |
| 187 name = construct_multi_filename(hda_id, filename, extension) | 187 name = construct_multi_filename(hda_id, filename, extension) |
| 188 target_output_filename = None | 188 target_output_filename = None |
| 189 data_type = "new_primary_dataset" | 189 data_type = "new_primary_dataset" |
| 190 if first: | 190 # if first: |
| 191 target_output_filename = file_name | 191 # target_output_filename = file_name |
| 192 dataset = "new_primary_dataset" | 192 # dataset = "new_primary_dataset" |
| 193 first = False | 193 # first = False |
| 194 else: | 194 # else: |
| 195 target_output_filename = os.path.normpath(os.path.join(extra_files_path, name)) | 195 target_output_filename = os.path.normpath(os.path.join(extra_files_path, name)) |
| 196 download = truststore.getFile(store, location) | 196 download = truststore.getFile(store, location) |
| 197 if download is None: | 197 if download is None: |
| 198 print("File %s not found." % location.name) | 198 print("File %s not found." % location.name) |
| 199 sys.exit(4) | 199 sys.exit(4) |
| 200 ungzip(download, target_output_filename) | 200 ungzip(download, target_output_filename) |