# HG changeset patch
# User brenninc
# Date 1443771645 14400
# Node ID ea3ace85fc6478f9a02bc64a0eb0d0ea5f470b7c
# Parent  aa679f6fc818cd128d45ebba394d26d3538551df
Uploaded

diff -r aa679f6fc818 -r ea3ace85fc64 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Oct 02 03:40:28 2015 -0400
+++ b/tool_dependencies.xml	Fri Oct 02 03:40:45 2015 -0400
@@ -1,70 +1,62 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="R" version="3.1.2">
-        <repository toolshed="https://testtoolshed.g2.bx.psu.edu/" name="brenninc_r_sept32105" owner="brenninc" changeset_revision="1d7f08f14e93" prior_installation_required="True" />
+    <package name="atlas" version="3.10.2">
+        <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="readline" version="6.3">
+        <repository changeset_revision="40f8ebe365e9" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="libpng" version="1.6.7">
+        <repository changeset_revision="ac6ef08bf0e6" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="cairo" version="1.14.2">
+        <repository changeset_revision="9fe5875b0ede" name="package_cairo_1_14_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="R_extend_level_one" version="0.0.2">
+    <package name="pixman" version="0.32.6">
+        <repository changeset_revision="2db67636b074" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="freetype" version="2.5.2">
+        <repository changeset_revision="55f81025bcb0" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="ncurses" version="6.0">
+        <repository changeset_revision="9331b44bf167" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="fontconfig" version="2.11.1">
+        <repository changeset_revision="e1df54930f90" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="R" version="3.2.1" >
+        <repository name="brenninc_r_sept32105" owner="brenninc" changeset_revision="3ab867976871" toolshed="https://testtoolshed.g2.bx.psu.edu/"/>
+    </package>  
+    <package name="R_cairo" version="0.0.3">
         <install version="1.0">
             <actions>
                 <action type="setup_r_environment">
-                    <repository changeset_revision="1d7f08f14e93" name="brenninc_r_sept32105" owner="brenninc" toolshed="https://testtoolshed.g2.bx.psu.edu/">
-                        <package name="R" version="3.1.2" />
-                        <!-- includes base, boot, 
-                                      class, cluster, codetools, compiler, 
-                                      datasets, 
-                                      foreign, 
-                                      graphics, grDevices, grid, 
-                                      KernSmooth, 
-                                      lattice, 
-                                      MASS, Matrix, methods, mgcv, 
-                                      nlme, nnet, 
-                                      parallel, 
-                                      rpart,
-                                      spatial, splines, stats, stats4, survival,
-                                      tcltk, tools,
-                                      utils-->
-
+                    <repository changeset_revision="40f8ebe365e9" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="readline" version="6.3" />
+                    </repository>
+                    <repository changeset_revision="ac6ef08bf0e6" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="libpng" version="1.6.7" />
+                    </repository>
+                    <repository changeset_revision="9fe5875b0ede" name="package_cairo_1_14_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="cairo" version="1.14.2" />
+                    </repository>
+                    <repository changeset_revision="2db67636b074" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="pixman" version="0.32.6" />
+                    </repository>
+                    <repository changeset_revision="55f81025bcb0" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="freetype" version="2.5.2" />
+                    </repository>
+                    <repository changeset_revision="9331b44bf167" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="ncurses" version="6.0" />
+                    </repository>
+                    <repository changeset_revision="e1df54930f90" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="fontconfig" version="2.11.1" />
+                    </repository>
+                    <repository name="brenninc_r_sept32105" owner="brenninc" 
+                                changeset_revision="3ab867976871" toolshed="https://testtoolshed.g2.bx.psu.edu/">
+                        <package name="R" version="3.2.1" />
                     </repository>  
-                    <!--No dependencies Not on https://bioarchive.galaxyproject.org -->
-                    <package>https://cran.r-project.org/src/contrib/acepack_1.3-3.3.tar.gz</package> 
-                    <package>https://cran.r-project.org/src/contrib/colorspace_1.2-6.tar.gz</package> 
-                        <!-- Imports graphics 
-                             Suggests: KernSmooth, MASS, kernlab, mvtnorm, vcd, dichromat, tcltk-->
-                    <package>https://cran.r-project.org/src/contrib/digest_0.6.8.tar.gz</package> 
-                    <package>https://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package> 
-                        <!-- Depends stats -->
-                    <package>https://cran.r-project.org/src/contrib/Formula_1.2-1.tar.gz</package> 
-                        <!-- Depends stats -->
-                    <package>https://cran.r-project.org/src/contrib/gtable_0.1.2.tar.gz</package> 
-                        <!-- Depends grid 
-                             Suggests: testthat, plyr-->
-                    <package>https://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package>
-                        <!-- Suggests: 	testthat, knitr -->
-                    <package>https://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package>
-                        <!-- Suggests: 	graph, Rgraphviz -->
-                    <package>https://cran.r-project.org/src/contrib/Archive/Rcpp/Rcpp_0.12.0.tar.gz</package>
-                        <!-- Imports: 	methods, utils
-                             Suggests: 	RUnit, inline, rbenchmark, highlight, pkgKitten (≥ 0.1.2) -->
-                    <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/snow_0.3-13.tar.gz</package>
-                        <!-- Depends: R (≥ 2.12.1), utils
-                             Suggests: Rmpi, rpvm, rlecuyer, rsprng, nws -->
-                    <package>https://cran.r-project.org/src/contrib/SparseM_1.7.tar.gz</package>
-                        <!-- Depends: R (≥ 2.15), methods
-                             Imports: graphics, stats, utils -->
-                    <package>https://cran.r-project.org/src/contrib/stringi_0.5-5.tar.gz</package>
-                        <!-- Depends: R (≥ 2.13.1)
-                             Imports: tools, utils, stats -->
-                    <package>https://cran.r-project.org/src/contrib/XML_3.98-1.3.tar.gz</package>
-                        <!-- Depends: R (≥ 2.13.0), methods, utils
-                             Suggests: bitops, RCurl -->
-                    <package>https://cran.r-project.org/src/contrib/xtable_1.7-4.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/stringr_1.0.0.tar.gz</package>
-                        <!-- Depends: R (≥ 2.14)
-                             Imports: stringi (≥ 0.4.1), magrittr
-                             Suggests: testthat, knitr -->
+                    <package>https://cran.r-project.org/src/contrib/Cairo_1.5-8.tar.gz</package>
                 </action>            
             </actions>
         </install>