# HG changeset patch
# User brenninc
# Date 1444130959 14400
# Node ID b083609f4f26f3824bd3c34fbecf5152cc3f525d
# Parent  4abeabe7a4cd720a5f511e2c2f1a16c48533f074
Uploaded

diff -r 4abeabe7a4cd -r b083609f4f26 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Oct 06 06:24:37 2015 -0400
+++ b/tool_dependencies.xml	Tue Oct 06 07:29:19 2015 -0400
@@ -1,54 +1,78 @@
 <?xml version="1.0"?>
 <tool_dependency>
+                <package name="atlas" version="3.10.2">
+                    <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                </package>
+                <package name="readline" version="6.3">
+                    <repository changeset_revision="40f8ebe365e9" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                </package>
+                <package name="libpng" version="1.6.7">
+                    <repository changeset_revision="ac6ef08bf0e6" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                </package>
+                <package name="cairo" version="1.14.2">
+                    <repository changeset_revision="9fe5875b0ede" name="package_cairo_1_14_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                </package>
+                <package name="pixman" version="0.32.6">
+                    <repository changeset_revision="2db67636b074" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                </package>
+                <package name="freetype" version="2.5.2">
+                    <repository changeset_revision="55f81025bcb0" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                </package>
+                <package name="ncurses" version="6.0">
+                    <repository changeset_revision="9331b44bf167" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                </package>
+                <package name="fontconfig" version="2.11.1">
+                    <repository changeset_revision="e1df54930f90" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+                </package>
     <package name="R" version="3.2.1">
         <repository toolshed="https://testtoolshed.g2.bx.psu.edu/" name="brenninc_r_sept32105" owner="brenninc" changeset_revision="4395fcf5d40c" prior_installation_required="True" />
     </package>
-    <package name="R_extend" version="0.0.1">
+    <package name="R_cairo" version="0.0.3">
         <install version="1.0">
             <actions>
-                <action type="setup_r_environment">
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" >
+                        <package name="atlas" version="3.10.2"/>
+                    </repository>
+                    <repository changeset_revision="40f8ebe365e9" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="readline" version="6.3" />
+                    </repository>
+                    <repository changeset_revision="ac6ef08bf0e6" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="libpng" version="1.6.7" />
+                    </repository>
+                    <repository changeset_revision="9fe5875b0ede" name="package_cairo_1_14_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="cairo" version="1.14.2" />
+                    </repository>
+                    <repository changeset_revision="2db67636b074" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="pixman" version="0.32.6" />
+                    </repository>
+                    <repository changeset_revision="55f81025bcb0" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="freetype" version="2.5.2" />
+                    </repository>
+                    <repository changeset_revision="9331b44bf167" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="ncurses" version="6.0" />
+                    </repository>
+                    <repository changeset_revision="e1df54930f90" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="fontconfig" version="2.11.1" />
+                    </repository>
                     <repository toolshed="https://testtoolshed.g2.bx.psu.edu/" name="brenninc_r_sept32105" owner="brenninc" changeset_revision="4395fcf5d40c" prior_installation_required="True" >
                         <package name="R" version="3.2.1" />
+                        <!-- includes base, boot, 
+                                      class, cluster, codetools, compiler, 
+                                      datasets, 
+                                      foreign, 
+                                      graphics, grDevices, grid, 
+                                      KernSmooth, 
+                                      lattice, 
+                                      MASS, Matrix, methods, mgcv, 
+                                      nlme, nnet, 
+                                      parallel, 
+                                      rpart,
+                                      spatial, splines, stats, stats4, survival,
+                                      tcltk, tools,
+                                      utils-->
                     </repository>  
-                    <package>https://cran.r-project.org/src/contrib/acepack_1.3-3.3.tar.gz</package> 
-                    <package>https://cran.r-project.org/src/contrib/colorspace_1.2-6.tar.gz</package> 
-                        <!-- Imports graphics 
-                             Suggests: KernSmooth, MASS, kernlab, mvtnorm, vcd, dichromat, tcltk-->
-                    <package>https://cran.r-project.org/src/contrib/digest_0.6.8.tar.gz</package> 
-                    <package>https://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package> 
-                        <!-- Depends stats -->
-                    <package>https://cran.r-project.org/src/contrib/Formula_1.2-1.tar.gz</package> 
-                        <!-- Depends stats -->
-                    <package>https://cran.r-project.org/src/contrib/gtable_0.1.2.tar.gz</package> 
-                        <!-- Depends grid 
-                             Suggests: testthat, plyr-->
-                    <package>https://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package>
-                        <!-- Suggests: 	testthat, knitr -->
-                    <package>https://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package>
-                        <!-- Suggests: 	graph, Rgraphviz -->
-                    <package>https://cran.r-project.org/src/contrib/Archive/Rcpp/Rcpp_0.12.0.tar.gz</package>
-                        <!-- Imports: 	methods, utils
-                             Suggests: 	RUnit, inline, rbenchmark, highlight, pkgKitten (≥ 0.1.2) -->
-                    <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/snow_0.3-13.tar.gz</package>
-                        <!-- Depends: R (≥ 2.12.1), utils
-                             Suggests: Rmpi, rpvm, rlecuyer, rsprng, nws -->
-                    <package>https://cran.r-project.org/src/contrib/SparseM_1.7.tar.gz</package>
-                        <!-- Depends: R (≥ 2.15), methods
-                             Imports: graphics, stats, utils -->
-                    <package>https://cran.r-project.org/src/contrib/stringi_0.5-5.tar.gz</package>
-                        <!-- Depends: R (≥ 2.13.1)
-                             Imports: tools, utils, stats -->
-                    <package>https://cran.r-project.org/src/contrib/stringr_1.0.0.tar.gz</package>
-                        <!-- Depends: R (≥ 2.14)
-                             Imports: stringi (≥ 0.4.1), magrittr
-                             Suggests: testthat, knitr -->
-                    <package>https://cran.r-project.org/src/contrib/XML_3.98-1.3.tar.gz</package>
-                        <!-- Depends: R (≥ 2.13.0), methods, utils
-                             Suggests: bitops, RCurl -->
-                    <package>https://cran.r-project.org/src/contrib/xtable_1.7-4.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/Cairo/Cairo_1.5-8.tar.gz</package>
                 </action>            
             </actions>
         </install>