# HG changeset patch
# User brenninc
# Date 1443708546 14400
# Node ID 748113da9ebecafbb73e0eee3f12c9394cf82ec2
# Parent  3b1d23fe8b0922ca419cdf75215226559df33c12
Uploaded

diff -r 3b1d23fe8b09 -r 748113da9ebe tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Oct 01 09:57:14 2015 -0400
+++ b/tool_dependencies.xml	Thu Oct 01 10:09:06 2015 -0400
@@ -26,35 +26,35 @@
 
                     </repository>  
                     <!--No dependencies Not on https://bioarchive.galaxyproject.org -->
-                    <package>https://cran.r-project.org/src/contrib/acepack_1.3-3.3.tar.gz</package> 
-                    <package>https://cran.r-project.org/src/contrib/colorspace_1.2-6.tar.gz</package> 
+                    <!--package>https://cran.r-project.org/src/contrib/acepack_1.3-3.3.tar.gz</package--> 
+                    <!--package>https://cran.r-project.org/src/contrib/colorspace_1.2-6.tar.gz</package--> 
                         <!-- Imports graphics 
                              Suggests: KernSmooth, MASS, kernlab, mvtnorm, vcd, dichromat, tcltk-->
-                    <package>https://cran.r-project.org/src/contrib/digest_0.6.8.tar.gz</package> 
-                    <package>https://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package> 
+                    <!--package>https://cran.r-project.org/src/contrib/digest_0.6.8.tar.gz</package--> 
+                    <!--package>https://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package--> 
                         <!-- Depends stats -->
-                    <package>https://cran.r-project.org/src/contrib/Formula_1.2-1.tar.gz</package> 
+                    <!--package>https://cran.r-project.org/src/contrib/Formula_1.2-1.tar.gz</package--> 
                         <!-- Depends stats -->
-                    <package>https://cran.r-project.org/src/contrib/gtable_0.1.2.tar.gz</package> 
+                    <!--package>https://cran.r-project.org/src/contrib/gtable_0.1.2.tar.gz</package--> 
                         <!-- Depends grid 
                              Suggests: testthat, plyr-->
-                    <package>https://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package>
+                    <!--package>https://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package-->
+                    <!--package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package-->
                         <!-- Suggests: 	testthat, knitr -->
-                    <package>https://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package>
+                    <!--package>https://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package-->
                         <!-- Suggests: 	graph, Rgraphviz -->
-                    <package>https://cran.r-project.org/src/contrib/Archive/Rcpp/Rcpp_0.12.0.tar.gz</package>
+                    <!--package>https://cran.r-project.org/src/contrib/Archive/Rcpp/Rcpp_0.12.0.tar.gz</package-->
                         <!-- Imports: 	methods, utils
                              Suggests: 	RUnit, inline, rbenchmark, highlight, pkgKitten (≥ 0.1.2) -->
-                    <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/snow_0.3-13.tar.gz</package>
+                    <!--package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package-->
+                    <!--package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package-->
+                    <!--package>https://cran.r-project.org/src/contrib/snow_0.3-13.tar.gz</package-->
                         <!-- Depends: R (≥ 2.12.1), utils
                              Suggests: Rmpi, rpvm, rlecuyer, rsprng, nws -->
-                    <package>https://cran.r-project.org/src/contrib/SparseM_1.7.tar.gz</package>
+                    <!--package>https://cran.r-project.org/src/contrib/SparseM_1.7.tar.gz</package-->
                         <!-- Depends: R (≥ 2.15), methods
                              Imports: graphics, stats, utils -->
-                    <package>https://cran.r-project.org/src/contrib/stringi_0.5-5.tar.gz</package>
+                    <!--package>https://cran.r-project.org/src/contrib/stringi_0.5-5.tar.gz</package-->
                         <!-- Depends: R (≥ 2.13.1)
                              Imports: tools, utils, stats -->
                     <!--package>https://cran.r-project.org/src/contrib/XML_3.98-1.3.tar.gz</package-->