# HG changeset patch
# User brenninc
# Date 1443711184 14400
# Node ID 300c34d388befad1c530d9e877da5d248929e983
# Parent  3eb64a686f28d8a01e2b7f862282fd7e9f1bfe1d
Uploaded

diff -r 3eb64a686f28 -r 300c34d388be packages.R
--- a/packages.R	Thu Oct 01 10:13:40 2015 -0400
+++ b/packages.R	Thu Oct 01 10:53:04 2015 -0400
@@ -1,18 +1,18 @@
 library(acepack)
-#library(colorspace)
-#library(dichromat)
-#library(digest)
-#library(Formula)
-#library(gtable)
-#library(labeling)
-#library(magrittr)
-#library(proto)
-#library(Rcpp)
-#library(RColorBrewer)
-#library(rjson)
-#library(snow)
-#library(SparseM)
-#library(stringi)
+library(colorspace)
+library(dichromat)
+library(digest)
+library(Formula)
+library(gtable)
+library(labeling)
+library(magrittr)
+library(proto)
+library(Rcpp)
+library(RColorBrewer)
+library(rjson)
+library(snow)
+library(SparseM)
+library(stringi)
 #library(stringr)
 #library(XML)
 #library(xtable)
diff -r 3eb64a686f28 -r 300c34d388be r_info.xml
--- a/r_info.xml	Thu Oct 01 10:13:40 2015 -0400
+++ b/r_info.xml	Thu Oct 01 10:53:04 2015 -0400
@@ -1,7 +1,7 @@
 <tool id="r_extended_level_one_sessioninfo" name="r_extended_level_one sessionInfo" version="0.1.beta">
   <requirements>
     <requirement type="package" version="3.1.2">R</requirement>
-    <requirement type="package" version="0.0.1">R_extend_level_one</requirement>
+    <requirement type="package" version="0.0.2">R_extend_level_one</requirement>
     <!--requirement type="package" version="2.0-0">R_dichroma</requirement-->
   </requirements>  
   <description>Lists packages installed into R</description>
diff -r 3eb64a686f28 -r 300c34d388be tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Oct 01 10:13:40 2015 -0400
+++ b/tool_dependencies.xml	Thu Oct 01 10:53:04 2015 -0400
@@ -27,34 +27,34 @@
                     </repository>  
                     <!--No dependencies Not on https://bioarchive.galaxyproject.org -->
                     <package>https://cran.r-project.org/src/contrib/acepack_1.3-3.3.tar.gz</package> 
-                    <!--package>https://cran.r-project.org/src/contrib/colorspace_1.2-6.tar.gz</package--> 
+                    <package>https://cran.r-project.org/src/contrib/colorspace_1.2-6.tar.gz</package> 
                         <!-- Imports graphics 
                              Suggests: KernSmooth, MASS, kernlab, mvtnorm, vcd, dichromat, tcltk-->
-                    <!--package>https://cran.r-project.org/src/contrib/digest_0.6.8.tar.gz</package--> 
-                    <!--package>https://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package--> 
+                    <package>https://cran.r-project.org/src/contrib/digest_0.6.8.tar.gz</package> 
+                    <package>https://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package> 
                         <!-- Depends stats -->
-                    <!--package>https://cran.r-project.org/src/contrib/Formula_1.2-1.tar.gz</package--> 
+                    <package>https://cran.r-project.org/src/contrib/Formula_1.2-1.tar.gz</package> 
                         <!-- Depends stats -->
-                    <!--package>https://cran.r-project.org/src/contrib/gtable_0.1.2.tar.gz</package--> 
+                    <package>https://cran.r-project.org/src/contrib/gtable_0.1.2.tar.gz</package> 
                         <!-- Depends grid 
                              Suggests: testthat, plyr-->
-                    <!--package>https://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package-->
-                    <!--package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package-->
+                    <package>https://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package>
                         <!-- Suggests: 	testthat, knitr -->
-                    <!--package>https://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package-->
+                    <package>https://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package>
                         <!-- Suggests: 	graph, Rgraphviz -->
-                    <!--package>https://cran.r-project.org/src/contrib/Archive/Rcpp/Rcpp_0.12.0.tar.gz</package-->
+                    <package>https://cran.r-project.org/src/contrib/Archive/Rcpp/Rcpp_0.12.0.tar.gz</package>
                         <!-- Imports: 	methods, utils
                              Suggests: 	RUnit, inline, rbenchmark, highlight, pkgKitten (≥ 0.1.2) -->
-                    <!--package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package-->
-                    <!--package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package-->
-                    <!--package>https://cran.r-project.org/src/contrib/snow_0.3-13.tar.gz</package-->
+                    <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/snow_0.3-13.tar.gz</package>
                         <!-- Depends: R (≥ 2.12.1), utils
                              Suggests: Rmpi, rpvm, rlecuyer, rsprng, nws -->
-                    <!--package>https://cran.r-project.org/src/contrib/SparseM_1.7.tar.gz</package-->
+                    <package>https://cran.r-project.org/src/contrib/SparseM_1.7.tar.gz</package>
                         <!-- Depends: R (≥ 2.15), methods
                              Imports: graphics, stats, utils -->
-                    <!--package>https://cran.r-project.org/src/contrib/stringi_0.5-5.tar.gz</package-->
+                    <package>https://cran.r-project.org/src/contrib/stringi_0.5-5.tar.gz</package>
                         <!-- Depends: R (≥ 2.13.1)
                              Imports: tools, utils, stats -->
                     <!--package>https://cran.r-project.org/src/contrib/XML_3.98-1.3.tar.gz</package-->