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view r_info.xml @ 40:b083609f4f26 draft

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author brenninc
date Tue, 06 Oct 2015 07:29:19 -0400
parents 1617e3331ee2
children 08a83c3406b7
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<tool id="r_extended_level_one_sessioninfo" name="r_extended_level_one sessionInfo" version="0.1.beta">
  <requirements>
    <requirement type="package" version="3.2.1">R</requirement>
    <requirement type="package" version="0.0.1">R_extend</requirement>
    <!--requirement type="package" version="2.0-0">R_dichroma</requirement-->
  </requirements>  
  <description>Lists packages installed into R</description>
  <stdio>
        <exit_code range="1" level="fatal" description="Error code 1 occurred" />
        <exit_code range="2:255" level="fatal" description="Unknown error occurred" />
  </stdio>
  <command   interpreter="bash">
    r_info.sh $__tool_directory__/packages.R $packages
  </command>
  <outputs>
    <data format="txt" name="packages" label="R Session Info"/>
  </outputs>

  <tests>
  </tests>

  <help>
<![CDATA[
This is a verification tool to see exactly which R this galaxy server is using.

It will outout the R version info and the R packages installed.
    ]]>
  </help>

</tool>