annotate r_info.xml @ 2:304b62d6e6cf draft

Uploaded
author brenninc
date Thu, 01 Oct 2015 09:08:19 -0400
parents d03274c7c546
children 7cfaea14f479
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
1 <tool id="r_extended_level_one_sessioninfo" name="r_extended_level_one sessionInfo" version="0.1.beta">
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
2 <requirements>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
3 <requirement type="package" version="3.1.2">R</requirement>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
4 <requirement type="package" version="0.0.1">R_mulitple</requirement>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
5 <!--requirement type="package" version="2.0-0">R_dichroma</requirement-->
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
6 </requirements>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
7 <description>Lists packages installed into R</description>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
8 <stdio>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
9 <exit_code range="1" level="fatal" description="Error code 1 occurred" />
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
10 <exit_code range="2:255" level="fatal" description="Unknown error occurred" />
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
11 </stdio>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
12 <command interpreter="bash">
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
13 r_info.sh $__tool_directory__/packages.R $packages
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
14 </command>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
15 <outputs>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
16 <data format="txt" name="packages" label="R Session Info"/>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
17 </outputs>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
18
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
19 <tests>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
20 </tests>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
21
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
22 <help>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
23 <![CDATA[
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
24 This is a verification tool to see exactly which R this galaxy server is using.
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
25
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
26 It will outout the R version info and the R packages installed.
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
27 ]]>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
28 </help>
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
29
d03274c7c546 Uploaded
brenninc
parents:
diff changeset
30 </tool>