comparison name_changer.py @ 2:abc729336fd0 draft default tip

Uploaded bug fix

1:c15850c85232

        with open(options.fixed_count_file, "w") as output_file:
            input_file.readline()  # job line
            start_header = ["Geneid", "Chr", "Start", "End", "Strand", "Length"]
            header_line = fix_header_line(start_header, input_file.readline(), new_names)
            output_file.write(header_line)
            count = 0
            for line in input_file:
                count += 1
                if count < 5:
                    output_file.write(line)

    with open(options.raw_summary_file, "r") as input_file:
        with open(options.fixed_summary_file, "w") as output_file:
            start_header = ["Status"]
            header_line = fix_header_line(start_header, input_file.readline(), new_names)

2:abc729336fd0

        with open(options.fixed_count_file, "w") as output_file:
            input_file.readline()  # job line
            start_header = ["Geneid", "Chr", "Start", "End", "Strand", "Length"]
            header_line = fix_header_line(start_header, input_file.readline(), new_names)
            output_file.write(header_line)
            for line in input_file:
                output_file.write(line)

    with open(options.raw_summary_file, "r") as input_file:
        with open(options.fixed_summary_file, "w") as output_file:
            start_header = ["Status"]
            header_line = fix_header_line(start_header, input_file.readline(), new_names)