|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="R" version="3.2.1">
|
|
|
4 <install version="1.0">
|
|
|
5 <actions>
|
|
|
6 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.1.tar.gz</action>
|
|
|
7 <package name="atlas" version="3.10.2">
|
|
|
8 <repository changeset_revision="c47756a8136e" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
9 </package>
|
|
|
10 <package name="cairo" version="1.14.2">
|
|
1
|
11 <repository changeset_revision="66ad0cc12007" name="package_cairo_1_14_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
0
|
12 </package>
|
|
|
13 <package name="fontconfig" version="2.11.1">
|
|
1
|
14 <repository changeset_revision="e356ec1fdd7b" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
0
|
15 </package>
|
|
|
16 <package name="freetype" version="2.5.2">
|
|
1
|
17 <repository changeset_revision="22887dea4683" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
0
|
18 </package>
|
|
|
19 <package name="libpng" version="1.6.7">
|
|
|
20 <repository changeset_revision="d1a409e4f67d" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
21 </package>
|
|
|
22 <package name="libxml2" version="2.9.1">
|
|
1
|
23 <repository changeset_revision="492a5c665b59" name="package_libxml2_2_9_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
0
|
24 </package>
|
|
|
25 <package name="ncurses" version="6.0">
|
|
|
26 <repository changeset_revision="15e2190c87ca" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
27 </package>
|
|
|
28 <package name="pixman" version="0.32.6">
|
|
|
29 <repository changeset_revision="82d1a680686f" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
30 </package>
|
|
|
31 <package name="readline" version="6.3">
|
|
|
32 <repository changeset_revision="de22495ddf2b" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
33 </package>
|
|
|
34 <package name="zlib" version="1.2.8">
|
|
|
35 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
36 </package>
|
|
|
37 <action type="set_environment_for_install">
|
|
2
|
38 <repository changeset_revision="c47756a8136e" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
39 <package name="atlas" version="3.10.2" />
|
|
|
40 </repository>
|
|
1
|
41 <repository changeset_revision="66ad0cc12007" name="package_cairo_1_14_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
0
|
42 <package name="cairo" version="1.14.2" />
|
|
|
43 </repository>
|
|
1
|
44 <repository changeset_revision="e356ec1fdd7b" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
0
|
45 <package name="fontconfig" version="2.11.1" />
|
|
|
46 </repository>
|
|
1
|
47 <repository changeset_revision="22887dea4683" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
0
|
48 <package name="freetype" version="2.5.2" />
|
|
|
49 </repository>
|
|
|
50 <repository changeset_revision="d1a409e4f67d" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
51 <package name="libpng" version="1.6.7" />
|
|
|
52 </repository>
|
|
1
|
53 <repository changeset_revision="492a5c665b59" name="package_libxml2_2_9_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
0
|
54 <package name="libxml2" version="2.9.1" />
|
|
|
55 </repository>
|
|
|
56 <repository changeset_revision="15e2190c87ca" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
57 <package name="ncurses" version="6.0" />
|
|
|
58 </repository>
|
|
|
59 <repository changeset_revision="82d1a680686f" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
60 <package name="pixman" version="0.32.6" />
|
|
|
61 </repository>
|
|
|
62 <repository changeset_revision="de22495ddf2b" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
63 <package name="readline" version="6.3" />
|
|
|
64 </repository>
|
|
|
65 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
66 <package name="zlib" version="1.2.8" />
|
|
|
67 </repository>
|
|
|
68 </action>
|
|
|
69 <action type="shell_command">
|
|
|
70 export LDFLAGS="-L$LIBPNG_LIB_PATH -L$PNG_LIBS -L$NCURSES_LIB_PATH -L$READLINE_LIB_PATH" &&
|
|
|
71 export LDFLAGS="$LDFLAGS -Wl,-rpath,$NCURSES_LIB_PATH" &&
|
|
|
72 export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" &&
|
|
|
73 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" &&
|
|
|
74 export LDFLAGS="$LDFLAGS -Wl,-rpath,$LIBPNG_LIB_PATH" &&
|
|
|
75 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" &&
|
|
|
76 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FONTCONFIG_LIB_PATH" &&
|
|
|
77 export LDFLAGS="$LDFLAGS -Wl,-rpath,$CAIRO_LIB_PATH" &&
|
|
|
78 export CFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" &&
|
|
|
79 export CXXFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" &&
|
|
|
80 export CPPFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" &&
|
|
|
81 ./configure --with-tcltk \
|
|
|
82 --with-blas \
|
|
|
83 --with-lapack \
|
|
|
84 --with-readline \
|
|
|
85 --with-cairo \
|
|
|
86 --with-libpng \
|
|
|
87 --without-x \
|
|
|
88 --enable-R-shlib \
|
|
|
89 --disable-R-framework \
|
|
|
90 --libdir=$INSTALL_DIR/lib \
|
|
|
91 --prefix=$INSTALL_DIR
|
|
|
92 </action>
|
|
|
93 <action type="make_install" />
|
|
|
94 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action>
|
|
|
95 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action>
|
|
|
96 <action type="set_environment">
|
|
2
|
97 <environment_variable action="set_to" name="NCURSES_ROOT_PATH">$ENV[NCURSES_ROOT_PATH]</environment_variable>
|
|
0
|
98 <environment_variable action="set_to" name="NCURSES_INCLUDE_PATH">$ENV[NCURSES_ROOT_PATH]/include</environment_variable>
|
|
|
99 <environment_variable action="set_to" name="NCURSES_LIB_PATH">$ENV[NCURSES_ROOT_PATH]/lib/</environment_variable>
|
|
|
100 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[NCURSES_ROOT_PATH]/lib</environment_variable>
|
|
|
101 <environment_variable action="prepend_to" name="LIBRARY_PATH">$ENV[NCURSES_ROOT_PATH]/lib</environment_variable>
|
|
|
102 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[NCURSES_ROOT_PATH]/include</environment_variable>
|
|
|
103 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$ENV[NCURSES_ROOT_PATH]/include</environment_variable>
|
|
|
104 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[NCURSES_ROOT_PATH]/include/ncurses</environment_variable>
|
|
|
105 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$ENV[NCURSES_ROOT_PATH]/include/ncurses</environment_variable>
|
|
|
106
|
|
2
|
107 <environment_variable action="set_to" name="READLINE_ROOT_PATH">$ENV[READLINE_ROOT_PATH]</environment_variable>
|
|
0
|
108 <environment_variable action="set_to" name="READLINE_INCLUDE_PATH">$ENV[READLINE_ROOT_PATH]/include</environment_variable>
|
|
|
109 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[READLINE_ROOT_PATH]/include</environment_variable>
|
|
|
110 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$ENV[READLINE_ROOT_PATH]/include</environment_variable>
|
|
|
111 <environment_variable action="set_to" name="READLINE_LIB_PATH">$ENV[READLINE_ROOT_PATH]/lib</environment_variable>
|
|
|
112 <environment_variable action="set_to" name="READLINE_BIN_PATH">$ENV[READLINE_ROOT_PATH]/bin</environment_variable>
|
|
|
113 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[READLINE_ROOT_PATH]/lib</environment_variable>
|
|
|
114 <!--environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[NCURSES_LIB_PATH]</environment_variable-->
|
|
|
115 <environment_variable action="prepend_to" name="LIBRARY_PATH">$ENV[READLINE_ROOT_PATH]/lib</environment_variable>
|
|
|
116 <environment_variable action="append_to" name="PATH">$ENV[READLINE_ROOT_PATH]/bin</environment_variable>
|
|
|
117
|
|
|
118 <environment_variable action="set_to" name="ATLAS_LIB_DIR">$ENV[ATLAS_LIB_DIR]/lib</environment_variable>
|
|
|
119 <environment_variable action="set_to" name="ATLAS_INCLUDE_DIR">$ENV[ATLAS_LIB_DIR]/include</environment_variable>
|
|
|
120 <environment_variable action="set_to" name="ATLAS_BLAS_LIB_DIR">$ENV[ATLAS_LIB_DIR]/lib/atlas</environment_variable>
|
|
|
121 <environment_variable action="set_to" name="ATLAS_LAPACK_LIB_DIR">$ENV[ATLAS_LIB_DIR]/lib/atlas</environment_variable>
|
|
|
122 <environment_variable action="set_to" name="ATLAS_ROOT_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
|
|
|
123 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/lib</environment_variable>
|
|
|
124 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/lib/atlas</environment_variable>
|
|
|
125
|
|
1
|
126 <environment_variable action="set_to" name="ZLIB_ROOT_PATH">$ENV[ZLIB_ROOT_PATH]</environment_variable>
|
|
|
127 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[ZLIB_ROOT_PATH]/lib/pkgconfig</environment_variable>
|
|
|
128 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ZLIB_ROOT_PATH]/lib</environment_variable>
|
|
|
129 <environment_variable action="prepend_to" name="LIBRARY_PATH">$ENV[ZLIB_ROOT_PATH]/lib</environment_variable>
|
|
|
130 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[ZLIB_ROOT_PATH]/include</environment_variable>
|
|
|
131 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$ENV[ZLIB_ROOT_PATH]/include</environment_variable>
|
|
|
132
|
|
|
133 <environment_variable action="set_to" name="LIBPNG_ROOT">$ENV[LIBPNG_ROOT]</environment_variable>
|
|
|
134 <environment_variable action="prepend_to" name="PATH">$ENV[LIBPNG_ROOT]/bin</environment_variable>
|
|
|
135 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_ROOT]/lib</environment_variable>
|
|
|
136 <environment_variable action="set_to" name="LIBPNG_INCLUDE_PATH">$ENV[LIBPNG_ROOT]/include</environment_variable>
|
|
|
137 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_ROOT]/lib</environment_variable>
|
|
|
138 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[LIBPNG_ROOT]/lib/pkgconfig</environment_variable>
|
|
0
|
139
|
|
2
|
140 <environment_variable action="set_to" name="PIXMAN_LIB_PATH">$ENV[PIXMAN_LIB_PATH]</environment_variable>
|
|
|
141 <environment_variable action="prepend_to" name="PATH">$ENV[PIXMAN_LIB_PATH]</environment_variable>
|
|
|
142 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[PIXMAN_LIB_PATH]/pkgconfig</environment_variable>
|
|
0
|
143
|
|
2
|
144 <environment_variable action="set_to" name="LIBXML2_ROOT_DIR">$ENV[LIBXML2_ROOT_DIR]</environment_variable>
|
|
|
145 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[LIBXML2_ROOT_DIR]/lib/pkgconfig</environment_variable>
|
|
|
146 <environment_variable action="prepend_to" name="PATH">$ENV[LIBXML2_ROOT_DIR]/bin</environment_variable>
|
|
|
147 <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$ENV[LIBXML2_ROOT_DIR]/lib</environment_variable>
|
|
|
148 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBXML2_ROOT_DIR]/lib</environment_variable>
|
|
|
149 <environment_variable action="prepend_to" name="LIBRARY_PATH">$ENV[LIBXML2_ROOT_DIR]/lib</environment_variable>
|
|
|
150 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[LIBXML2_ROOT_DIR]/include</environment_variable>
|
|
|
151 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$ENV[LIBXML2_ROOT_DIR]/include</environment_variable>
|
|
0
|
152
|
|
2
|
153 <environment_variable action="set_to" name="FREETYPE_ROOT_DIR">$ENV[FREETYPE_ROOT_DIR]</environment_variable>
|
|
|
154 <environment_variable action="set_to" name="FREETYPE_LIB_PATH">$ENV[FREETYPE_ROOT_DIR]/lib</environment_variable>
|
|
|
155 <environment_variable action="prepend_to" name="PATH">$ENV[FREETYPE_ROOT_DIR]/bin</environment_variable>
|
|
|
156 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[FREETYPE_ROOT_DIR]/lib</environment_variable>
|
|
|
157 <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$ENV[FREETYPE_ROOT_DIR]/lib</environment_variable>
|
|
|
158 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[FREETYPE_ROOT_DIR]/include</environment_variable>
|
|
|
159 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$ENV[FREETYPE_ROOT_DIR]/include</environment_variable>
|
|
|
160 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[FREETYPE_ROOT_DIR]/lib/pkgconfig</environment_variable>
|
|
0
|
161
|
|
|
162 <environment_variable action="set_to" name="FONTCONFIG_ROOT_PATH">$ENV[FONTCONFIG_ROOT_PATH]</environment_variable>
|
|
|
163 <environment_variable action="prepend_to" name="PATH">$ENV[FONTCONFIG_ROOT_PATH]/bin</environment_variable>
|
|
|
164 <environment_variable action="set_to" name="FONTCONFIG_FILE">$ENV[FONTCONFIG_ROOT_PATH]/etc/fonts/fonts.conf</environment_variable>
|
|
|
165 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[FONTCONFIG_ROOT_PATH]/lib/pkgconfig</environment_variable>
|
|
|
166 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[FONTCONFIG_ROOT_PATH]/lib/</environment_variable>
|
|
1
|
167 <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$ENV[FONTCONFIG_ROOT_PATH]/lib/</environment_variable>
|
|
0
|
168 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[FONTCONFIG_ROOT_PATH]/include/</environment_variable>
|
|
|
169 <environment_variable action="prepend_to" name="CPP_INCLUDE_PATH">$ENV[FONTCONFIG_ROOT_PATH]/include/</environment_variable>
|
|
|
170
|
|
2
|
171 <environment_variable action="set_to" name="CAIRO_ROOT_DIR">$ENV[CAIRO_ROOT_DIR]</environment_variable>
|
|
|
172 <environment_variable action="prepend_to" name="PATH">$ENV[CAIRO_ROOT_DIR]/bin</environment_variable>
|
|
|
173 <environment_variable action="prepend_to" name="CAIRO_LIB_PATH">$ENV[CAIRO_ROOT_DIR]/lib</environment_variable>
|
|
|
174 <environment_variable action="prepend_to" name="CAIRO_INCLUDE_PATH">$ENV[CAIRO_ROOT_DIR]/include</environment_variable>
|
|
|
175 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[CAIRO_ROOT_DIR]/lib/pkgconfig</environment_variable>
|
|
|
176 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[CAIRO_ROOT_DIR]/lib</environment_variable>
|
|
|
177 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[CAIRO_ROOT_DIR]//include</environment_variable>
|
|
|
178 <environment_variable action="set_to" name="CAIRO_CFLAGS">-I$ENV[CAIRO_ROOT_DIR]/include/cairo</environment_variable>
|
|
|
179 <environment_variable action="set_to" name="CAIRO_LIBS">"-L$ENV[CAIRO_ROOT_DIR]/lib -lcairo"</environment_variable>
|
|
0
|
180
|
|
|
181 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable>
|
|
|
182 <environment_variable action="set_to" name="R_HOME_DIR">$INSTALL_DIR/lib/R</environment_variable>
|
|
|
183 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable>
|
|
|
184 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable>
|
|
|
185 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable>
|
|
|
186 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
|
|
|
187 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
|
|
|
188 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
|
|
|
189 <environment_variable action="prepend_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
|
|
|
190 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
|
|
|
191 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
|
|
|
192
|
|
|
193 </action>
|
|
|
194 </actions>
|
|
|
195 </install>
|
|
|
196 <readme>
|
|
|
197 The precompiled versions of this package were built 2015-07-27.
|
|
|
198 R is a free software environment for statistical computing and graphics.
|
|
|
199 NOTE: See custom compilation options above.
|
|
|
200 </readme>
|
|
|
201 </package>
|
|
|
202 </tool_dependency>
|
