# HG changeset patch
# User brenninc
# Date 1458825382 14400
# Node ID 664d90d44e8239dfeb136418f8a085b2288574e8

Uploaded first version

diff -r 000000000000 -r 664d90d44e82 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Mar 24 09:16:22 2016 -0400
@@ -0,0 +1,30 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="ncurses" version="5.9">
+        <repository changeset_revision="47ad4d7ba9fe" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="zlib" version="1.2.8">
+        <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="samtools" version="1.2">
+        <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="pairedbamtobed12" version="1.0">
+        <install version="1.0">
+            <actions>
+                <!-- Original source https://github.com/Population-Transcriptomics/pairedBamToBed12  commit/8716972653757dbe828a4cff2e11337c12eaf75c -->
+                <action type="download_by_url">https://raw.githubusercontent.com/Christian-B/galaxy_shedtools/master/package_pairedBamToBed12/pairedBamToBed12.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="move_directory_files">
+                    <source_directory>bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+                <action type="set_environment">
+                  <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                  <environment_variable action="set_to" name="PAIREDBAMTODEB12_ROOT">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme />
+    </package>
+</tool_dependency>