diff directory_copier.py @ 1:1487421505f1 draft

Uploaded correct tool this time

--- a/directory_copier.py	Wed Mar 23 11:56:50 2016 -0400
+++ b/directory_copier.py	Wed Mar 23 12:08:33 2016 -0400
@@ -10,34 +10,6 @@
     sys.exit(1)
 
 
-def get_tool_data(name):
-    root_dir = os.path.dirname((os.path.realpath(__file__)))
-    path = os.path.join(root_dir,"tool-data",name)
-    if not(os.path.isfile(path)): 
-        report_error(name,"file not found in tool's tool-data folder. Please ask you galaxy admin to add it back")
-    return path
-
-
-def check_white_list(path_to_check):
-    white_list = get_tool_data("white-list.ini")
-    with open(white_list, 'r') as white_list_file:
-        for line in white_list_file:
-            line = line.strip()
-            if len(line) >= 1 and path_to_check.startswith(line):
-                return True
-    report_error(path_to_check,"has not been included in the white list. Please contact the local galaxy admin to add it.")
-
-
-def check_black_list(path_to_check):
-    black_list = get_tool_data("black-list.ini")
-    with open(black_list, 'r') as black_list_file:
-        for line in black_list_file:
-            line = line.strip()
-            if len(line) >= 1 and line in path_to_check:
-                report_error(line,"has been black list so",path_to_check,"is not allowed. Please contact the local galaxy admin to change that, or add a symlink.")
-    return True
-
-
 def check_pattern_get_new_name(a_file, ending, options):
     if options.start:
         if not(a_file.startswith(options.start)):
@@ -130,9 +102,5 @@
     path = options.path.strip()
     if path[-1] != '/':
         path = path + "/"
-    check_white_list(path)
-    print path, "white listed"
-    check_black_list(path)
-    print path, "not black listed"
     copy_and_link(path, options)