Mercurial > repos > brenninc > brenninc_r_oct9_2015
view tool_dependencies.xml @ 5:a010580cd2d4 draft
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| author | brenninc |
|---|---|
| date | Fri, 09 Oct 2015 06:52:41 -0400 |
| parents | d39500b35beb |
| children | 3f2e129aae27 |
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<?xml version="1.0"?> <tool_dependency> <package name="R" version="3.2.1"> <install version="1.0"> <actions> <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.1.tar.gz</action> <package name="atlas" version="3.10.2"> <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="readline" version="6.3"> <repository changeset_revision="caf1e20aac98" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="libpng" version="1.6.7"> <repository changeset_revision="ac6ef08bf0e6" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <!--package name="cairo" version="1.14.2"> <repository name="package_cairo_1_14_2" owner="iuc" prior_installation_required="True" /> </package> <package name="pixman" version="0.32.6"> <repository name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" /> </package> <package name="freetype" version="2.5.2"> <repository name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" /> </package> <package name="ncurses" version="6.0"> <repository name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" /> </package> <package name="fontconfig" version="2.11.1"> <repository name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" /> </package--> <action type="set_environment_for_install"> <repository changeset_revision="caf1e20aac98" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="readline" version="6.3" /> </repository> <repository changeset_revision="ac6ef08bf0e6" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="libpng" version="1.6.7" /> </repository> <!--repository name="package_cairo_1_14_2" owner="iuc" prior_installation_required="True" > <package name="cairo" version="1.14.2" /> </repository> <repository name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" > <package name="pixman" version="0.32.6" /> </repository> <repository name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" > <package name="freetype" version="2.5.2" /> </repository> <repository name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" > <package name="ncurses" version="6.0" /> </repository> <repository name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" > <package name="fontconfig" version="2.11.1" /> </repository--> </action> <action type="shell_command"> export LDFLAGS="-L$LIBPNG_LIB_PATH -L$PNG_LIBS -L$NCURSES_LIB_PATH -L$READLINE_LIB_PATH" && export LDFLAGS="$LDFLAGS -Wl,-rpath,$NCURSES_LIB_PATH" && export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" && export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" && export LDFLAGS="$LDFLAGS -Wl,-rpath,$LIBPNG_LIB_PATH" && export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" && export LDFLAGS="$LDFLAGS -Wl,-rpath,$FONTCONFIG_LIB_PATH" && export LDFLAGS="$LDFLAGS -Wl,-rpath,$CAIRO_LIB_PATH" && export CFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" && export CXXFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" && export CPPFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" && ./configure --with-tcltk \ --with-blas \ --with-lapack \ --with-readline \ --with-cairo \ --with-libpng \ --without-x \ --enable-R-shlib \ --disable-R-framework \ --libdir=$INSTALL_DIR/lib \ --prefix=$INSTALL_DIR </action> <action type="make_install" /> <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action> <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action> <action type="set_environment"> <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable> <environment_variable action="set_to" name="R_HOME_DIR">$INSTALL_DIR/lib/R</environment_variable> <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable> <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable> <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable> <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable> <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> <environment_variable action="prepend_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable> <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> The precompiled versions of this package were built 2015-07-27. R is a free software environment for statistical computing and graphics. NOTE: See custom compilation options above. </readme> </package> </tool_dependency>