Mercurial > repos > boris > phylorelatives

diff phylorelatives.py @ 25:29ca7d28f6c7 draft

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added --vanilla to rpy2 init options
author boris
date Fri, 07 Jun 2013 10:03:39 -0400
parents 90da8b21438c
children 75dcc9910f6d
line wrap: on
line diff
--- a/phylorelatives.py	Fri Jun 07 00:57:19 2013 -0400
+++ b/phylorelatives.py	Fri Jun 07 10:03:39 2013 -0400
@@ -29,7 +29,7 @@
 import array
 import dendropy
 import rpy2.rinterface
-rpy2.rinterface.set_initoptions(('rpy2','--no-environ','--no-site-file','--no-init-file','--quiet'))
+rpy2.rinterface.set_initoptions(('rpy2','--vanilla','--quiet'))
 import rpy2.robjects as robjects
 from rpy2.robjects.packages import importr