# HG changeset patch
# User boris
# Date 1370626210 14400
# Node ID cc1d274bf1555a4cbcbb5741aa7d4aa4f11f8310
# Parent  bea6d7eeab368ce1d2d560bbc2b3def6c43a5b53
Uploaded

diff -r bea6d7eeab36 -r cc1d274bf155 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jun 07 13:30:10 2013 -0400
@@ -0,0 +1,39 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="readline" version="6.2">
+        <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
+    </package>
+    <package name="R" version="2.15.0">
+        <repository changeset_revision="87a1a0aef849" name="package_r_2_15" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
+    </package>
+    <package name="rpy2" version="2.2.6">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
+                        <package name="readline" version="6.2" />
+                    </repository>
+                    <repository changeset_revision="87a1a0aef849" name="package_r_2_15" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
+                        <package name="R" version="2.15.0" />
+                    </repository>
+                </action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="shell_command">export R_HOME=$R_HOME &amp;&amp; export R_LIBS=$R_LIBS &amp;&amp;
+                                             export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="R_HOME">$ENV[R_HOME]</environment_variable>
+                    <environment_variable action="set_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable>
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>In order to upgrade one will have to first remove older installed rpy2 packages then and only then install the recent version of rpy2 wished.
+                Python version 2.5 or greater, as well as R-2.8.0 or greater are required.
+                When compiling R from source, do not forget to specify –enable-R-shlib at the ./configure step.
+                gcc-4.4 is used for compiling the C parts on Linux.
+                If installing from a linux distribution, the Python-dev package will obviously be required to compile rpy2
+                On OS X, the XCode tools will be required in order to compile rpy2.</readme>
+    </package>
+</tool_dependency>