comparison tool_dependencies.xml @ 18:1b5bd31fcf2a draft

Uploaded
author boris
date Sun, 09 Jun 2013 17:17:53 -0400
parents f7782dc74094
children a46e4b79b6b6
comparison
equal deleted inserted replaced
17:f7782dc74094 18:1b5bd31fcf2a
2 <tool_dependency> 2 <tool_dependency>
3 <package name="readline" version="6.2"> 3 <package name="readline" version="6.2">
4 <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> 4 <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
5 </package> 5 </package>
6 <package name="R" version="2.15.0"> 6 <package name="R" version="2.15.0">
7 <repository changeset_revision="87a1a0aef849" name="package_r_2_15" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> 7 <repository changeset_revision="f6b8f51b71a2" name="package_r_2_15" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
8 </package>
9 <package name="ape" version="3.0-8">
10 <repository changeset_revision="60624d152d06" name="package_ape_3_0" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
8 </package> 11 </package>
9 <package name="rpy2" version="2.2.6"> 12 <package name="rpy2" version="2.2.6">
10 <install version="1.0"> 13 <install version="1.0">
11 <actions> 14 <actions>
12 <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz</action> 15 <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz</action>
13 <action type="set_environment_for_install"> 16 <action type="set_environment_for_install">
14 <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/"> 17 <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
15 <package name="readline" version="6.2" /> 18 <package name="readline" version="6.2" />
16 </repository> 19 </repository>
17 <repository changeset_revision="87a1a0aef849" name="package_r_2_15" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/"> 20 <repository changeset_revision="f6b8f51b71a2" name="package_r_2_15" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
18 <package name="R" version="2.15.0" /> 21 <package name="R" version="2.15.0" />
22 </repository>
23 <repository changeset_revision="60624d152d06" name="package_ape_3_0" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
24 <package name="ape" version="3.0-8" />
19 </repository> 25 </repository>
20 </action> 26 </action>
21 <action type="make_directory">$INSTALL_DIR/lib/python</action> 27 <action type="make_directory">$INSTALL_DIR/lib/python</action>
22 <action type="shell_command">export R_HOME=$R_HOME &amp;&amp; export R_LIBS=$R_LIBS &amp;&amp; export PATH=$PATH &amp;&amp; 28 <action type="shell_command">export R_HOME=$R_HOME &amp;&amp; export R_LIBS=$R_LIBS &amp;&amp; export PATH=$PATH &amp;&amp;
23 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> 29 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>