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16
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="readline" version="6.2">
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4 <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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5 </package>
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18
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6 <package name="ape" version="3.0-8">
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7 <repository changeset_revision="60624d152d06" name="package_ape_3_0" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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16
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8 </package>
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9 <package name="rpy2" version="2.2.6">
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz</action>
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13 <action type="set_environment_for_install">
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14 <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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15 <package name="readline" version="6.2" />
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16 </repository>
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18
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17 <repository changeset_revision="60624d152d06" name="package_ape_3_0" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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18 <package name="ape" version="3.0-8" />
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19 </repository>
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16
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20 </action>
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21 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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19
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22 <action type="shell_command">export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && export PATH=$PATH &&export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &&python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
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16
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23 <action type="set_environment">
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24 <environment_variable action="set_to" name="R_HOME">$ENV[R_HOME]</environment_variable>
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25 <environment_variable action="set_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable>
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17
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26 <environment_variable action="set_to" name="PATH">$ENV[PATH]</environment_variable>
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16
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27 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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29 </action>
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30 </actions>
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31 </install>
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32 <readme>In order to upgrade one will have to first remove older installed rpy2 packages then and only then install the recent version of rpy2 wished.
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33 Python version 2.5 or greater, as well as R-2.8.0 or greater are required.
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34 When compiling R from source, do not forget to specify –enable-R-shlib at the ./configure step.
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35 gcc-4.4 is used for compiling the C parts on Linux.
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36 If installing from a linux distribution, the Python-dev package will obviously be required to compile rpy2
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37 On OS X, the XCode tools will be required in order to compile rpy2.</readme>
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38 </package>
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39 </tool_dependency>
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