# HG changeset patch
# User boris
# Date 1370812648 14400
# Node ID 60624d152d0682a6fc53597a62ef19629c65db1a
# Parent  16657436da0b754ae87290bbbc3257d2c5e5eae9
Uploaded

diff -r 16657436da0b -r 60624d152d06 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Jun 07 12:37:49 2013 -0400
+++ b/tool_dependencies.xml	Sun Jun 09 17:17:28 2013 -0400
@@ -1,20 +1,21 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="R" version="2.15.0">
-        <repository changeset_revision="87a1a0aef849" name="package_r_2_15" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
+        <repository changeset_revision="f6b8f51b71a2" name="package_r_2_15" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
     </package>
     <package name="ape" version="3.0-8">
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://cran.r-project.org/src/contrib/ape_3.0-8.tar.gz</action>
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="87a1a0aef849" name="package_r_2_15" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
+                    <repository changeset_revision="f6b8f51b71a2" name="package_r_2_15" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                         <package name="R" version="2.15.0" />
                     </repository>
                 </action>
                 <action type="make_directory">$INSTALL_DIR</action>
-                <action type="shell_command"> export R_HOME=$R_HOME &amp;&amp; export R_LIBS=$R_LIBS &amp;&amp; R CMD INSTALL ape_3.0-8.tar.gz -l $INSTALL_DIR </action>
+                <action type="shell_command"> export PATH=$PATH &amp;&amp; export R_HOME=$R_HOME &amp;&amp; export R_LIBS=$R_LIBS &amp;&amp; R CMD INSTALL ape_3.0-8.tar.gz -l $INSTALL_DIR </action>
                 <action type="set_environment">
+                <environment_variable action="set_to" name="PATH">$ENV[PATH]</environment_variable>
                 <environment_variable action="set_to" name="R_HOME">$ENV[R_HOME]</environment_variable>
                 <environment_variable action="set_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable>
                 <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>