Mercurial > repos > boris > package_ape_3_0

view tool_dependencies.xml @ 2:8142434b2805 draft

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changed R dependency revision
author boris
date Wed, 05 Jun 2013 15:22:27 -0400
parents 4e1ab37145eb
children 66a948a7792e
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<tool_dependency>
    <package name="R" version="2.15.0">
        <repository changeset_revision="562ebf52a8fe" name="package_r_2_15" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/"/>
    </package>
    <package name="ape" version="3.0-8">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://cran.r-project.org/src/contrib/ape_3.0-8.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="562ebf52a8fe" name="package_r_2_15" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                        <package name="R" version="2.15.0"/>
                    </repository>
                </action>
                <action type="make_directory">$INSTALL_DIR</action>
                <action type="shell_command">export R_HOME=${R_HOME} &amp;&amp; export R_LIBS=${R_LIBS} &amp;&amp; R CMD INSTALL ape_3.0-8.tar.gz -l $INSTALL_DIR </action>
                <action type="set_environment">
                <environment_variable name="R_HOME" action="set_to">${R_HOME}</environment_variable>
                <environment_variable name="R_LIBS" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme> ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees</readme>
    </package>
</tool_dependency>